Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C0058_RS24250 Genome accession   NZ_CP025624
Coordinates   5191991..5194282 (-) Length   763 a.a.
NCBI ID   WP_102369708.1    Uniprot ID   -
Organism   Pseudomonas sp. NC02     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5186991..5199282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0058_RS24215 (C0058_24215) murB 5187438..5188457 (-) 1020 WP_004371335.1 UDP-N-acetylmuramate dehydrogenase -
  C0058_RS24220 (C0058_24220) - 5188454..5188918 (-) 465 WP_004371338.1 low molecular weight protein-tyrosine-phosphatase -
  C0058_RS24225 (C0058_24225) kdsB 5188918..5189682 (-) 765 WP_008434982.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C0058_RS24230 (C0058_24230) - 5189679..5189864 (-) 186 WP_003174668.1 Trm112 family protein -
  C0058_RS24235 (C0058_24235) lpxK 5189889..5190899 (-) 1011 WP_102369707.1 tetraacyldisaccharide 4'-kinase -
  C0058_RS24240 (C0058_24240) - 5190899..5191327 (-) 429 WP_004371361.1 biopolymer transporter ExbD -
  C0058_RS24245 (C0058_24245) exbB 5191324..5191959 (-) 636 WP_004371363.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C0058_RS24250 (C0058_24250) comA 5191991..5194282 (-) 2292 WP_102369708.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C0058_RS24255 (C0058_24255) - 5194430..5194945 (+) 516 WP_004371367.1 DUF2062 domain-containing protein -
  C0058_RS24260 (C0058_24260) - 5194949..5196319 (-) 1371 WP_008434990.1 sensor histidine kinase -
  C0058_RS24265 (C0058_24265) - 5196306..5197034 (-) 729 WP_004371371.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 763 a.a.        Molecular weight: 82830.26 Da        Isoelectric Point: 10.0460

>NTDB_id=263139 C0058_RS24250 WP_102369708.1 5191991..5194282(-) (comA) [Pseudomonas sp. NC02]
MFALALGLLALRFLPALPSGGWLLLMPVLALMLLPFRTYPLGFFLLGLGWACLSAQWALDDRLAPHLDGQTRWVEGRVSG
LPQQMGDGVRFELTDSRSRKDLLPKRIRVSWRGGPPVKSGERWRLAVTLKRPSGLLNADGFDYEAWLLAQRIGATGSVKD
GQLLAPARHAWRDGIRQRLLAVDAQGREAGLAALVLGDGSGLAAEDWRVLQATGTVHLLVISGQHIGLLAGLIYGLVAGL
ARYGGWPKPLPWLPWACGLAFAAALGYGLLAGFEVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALDAVLILEPLASLQ
PGFWLSFAAVAVLILAFSGRLGPWPLWQAWTRAQWMIAIGLFPLLLVLGLPISLSGPLANLVAVPWISLVVLPLALLGTV
LLPLPYIGEGLLWLAGGTLDGLFKALALLAQYLPAWIPAQVPIGYWLVSLLGAVLLLLPKGVPFRLLGWPMLLLAVFPPR
ESIPHGLVEVVQLDVGQGLAIILRTRNHVLLYDAGPRSGEFDLGARVVLPALRKLGVAELDVMLLSHADADHAGGALAVA
HGLPVKRVVGGETARLPASLGTQACVSGEQWEWDGVRFELWQWPDATDGNQMSCVLRVQANGERLLLTGDIDHDAERALL
ATPMGAPVDWLQAPHHGSRSSSSWAFLQRLAPKAVLISRGRSNGFGHPHPQVLERYQAMGSAIYDSAEQGALRLQLGTFQ
PPLAARSQRRFWRERPPQNSVTKDRPLRQDALGQASPSTGPLW

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=263139 C0058_RS24250 WP_102369708.1 5191991..5194282(-) (comA) [Pseudomonas sp. NC02]
ATGTTCGCACTCGCGCTGGGGCTGCTCGCCTTGCGTTTTTTACCCGCGTTGCCGTCCGGCGGCTGGCTGTTGCTGATGCC
GGTGCTGGCCCTGATGTTGTTGCCTTTTCGTACCTATCCGCTGGGGTTTTTCCTGCTTGGCCTGGGCTGGGCATGCCTCA
GCGCGCAGTGGGCGCTGGATGACCGGTTGGCCCCGCATCTGGATGGCCAGACCCGCTGGGTGGAAGGGCGTGTCAGCGGG
TTACCGCAGCAGATGGGCGACGGTGTGCGCTTCGAACTGACCGACAGCCGGTCACGCAAGGACCTGCTTCCCAAGCGCAT
TCGCGTGTCCTGGCGCGGCGGCCCACCGGTTAAGAGCGGTGAGCGCTGGCGACTGGCGGTGACTCTCAAGCGTCCTTCCG
GATTGCTCAATGCCGATGGCTTTGACTATGAAGCCTGGCTGCTGGCCCAGCGGATTGGCGCCACCGGCTCGGTCAAGGAC
GGCCAACTGCTGGCACCGGCACGACATGCCTGGCGCGACGGGATTCGCCAGCGGCTGCTGGCAGTGGATGCCCAGGGGCG
AGAGGCGGGCCTGGCGGCGCTGGTGCTCGGCGATGGTTCCGGGTTGGCCGCCGAGGATTGGCGGGTCCTGCAAGCCACTG
GCACCGTGCATTTACTGGTGATATCCGGGCAGCACATCGGCCTGCTGGCGGGGTTGATCTATGGCCTGGTCGCCGGTCTT
GCGCGCTACGGGGGTTGGCCGAAACCTTTGCCGTGGCTGCCCTGGGCCTGCGGCCTGGCGTTTGCTGCAGCGCTGGGCTA
CGGCCTGCTGGCAGGTTTCGAGGTGCCGGTGCAACGGGCCTGCGTGATGGTGGGCCTGGTGTTGCTGTGGCGCCTGCGGT
TTCGTCACCTGGGAATCTGGTGGCCGCTGTTGCTGGCGCTGGACGCGGTGCTGATCCTCGAACCGCTGGCCAGCCTGCAG
CCGGGGTTCTGGTTGTCTTTTGCGGCTGTTGCGGTGCTGATTTTGGCGTTCAGTGGCCGATTGGGCCCCTGGCCCTTGTG
GCAAGCCTGGACCCGCGCCCAATGGATGATTGCCATCGGCCTGTTTCCGCTGCTGCTGGTGCTCGGCCTGCCCATCAGCC
TGAGCGGGCCGCTGGCCAACCTAGTTGCGGTGCCGTGGATCAGCCTGGTGGTGCTGCCCCTGGCCTTACTGGGTACGGTG
TTATTGCCGCTGCCTTATATAGGAGAGGGGTTGTTATGGCTGGCGGGCGGCACGCTGGACGGGCTGTTCAAGGCACTGGC
GCTGCTGGCGCAGTACTTGCCGGCCTGGATACCGGCGCAAGTGCCCATTGGCTATTGGCTGGTGAGCCTGCTGGGGGCGG
TGCTGTTATTGCTGCCCAAGGGCGTCCCGTTTCGGCTGCTGGGTTGGCCGATGTTGCTGCTGGCGGTGTTTCCGCCGCGG
GAGTCGATACCTCATGGGCTGGTCGAGGTGGTGCAACTGGACGTCGGCCAGGGGTTGGCGATCATCCTGCGTACCCGCAA
CCATGTACTGCTGTATGACGCCGGGCCGCGCTCCGGTGAGTTCGATCTTGGCGCGCGTGTCGTATTGCCTGCGTTGCGCA
AGCTGGGGGTCGCAGAGCTGGACGTGATGCTGCTCAGTCATGCCGATGCCGATCATGCCGGCGGCGCGTTGGCCGTCGCC
CATGGGTTGCCGGTCAAGCGTGTGGTGGGCGGTGAGACGGCACGGCTGCCGGCCTCGCTCGGTACCCAGGCGTGTGTCAG
CGGCGAGCAGTGGGAGTGGGACGGCGTGAGGTTCGAGCTATGGCAATGGCCTGATGCGACGGACGGTAACCAGATGTCCT
GCGTGTTGCGGGTGCAGGCCAATGGCGAGCGCTTGTTGCTGACCGGGGATATTGACCATGACGCCGAGCGGGCATTGCTG
GCCACTCCCATGGGCGCTCCTGTCGATTGGCTGCAAGCGCCGCACCACGGCAGCCGCAGCTCGTCGTCATGGGCCTTTCT
ACAGCGCCTGGCACCCAAGGCCGTGTTGATTTCCCGGGGGCGCAGCAATGGGTTTGGCCACCCGCATCCACAGGTGCTGG
AGCGTTACCAGGCCATGGGCAGCGCGATTTATGACAGTGCCGAGCAAGGCGCACTCCGCCTGCAACTGGGCACGTTCCAG
CCGCCGCTGGCCGCGCGCAGCCAGCGGCGTTTCTGGCGCGAGCGCCCGCCGCAAAACAGCGTTACCAAAGACCGGCCCCT
GCGTCAGGATGCTCTGGGGCAGGCCAGCCCTTCCACCGGACCCTTATGGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(16-163)

Competence protein (Competence)

(194-459)

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.667

94.364

0.582
  comA Ralstonia pseudosolanacearum GMI1000

35.099

100

0.374

Multiple sequence alignment