Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DV119_RS11055 Genome accession   NZ_CP031245
Coordinates   2057689..2058285 (-) Length   198 a.a.
NCBI ID   WP_000966754.1    Uniprot ID   A0A1X1J688
Organism   Streptococcus pneumoniae strain M16808     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2052689..2063285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV119_RS11040 - 2054216..2054920 (-) 705 WP_001055246.1 TIGR02206 family membrane protein -
  DV119_RS11045 - 2055015..2056388 (-) 1374 WP_050089118.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  DV119_RS11050 - 2056472..2057515 (-) 1044 WP_050089116.1 D-alanine--D-alanine ligase -
  DV119_RS11055 recR 2057689..2058285 (-) 597 WP_000966754.1 recombination mediator RecR Machinery gene
  DV119_RS11060 pbp2b 2058296..2060353 (-) 2058 WP_078372667.1 penicillin-binding protein PBP2B -
  DV119_RS11065 - 2060553..2061404 (+) 852 WP_000360336.1 MurR/RpiR family transcriptional regulator -
  DV119_RS11070 - 2061420..2062304 (-) 885 WP_000222983.1 ROK family protein -
  DV119_RS11075 - 2062322..2063239 (-) 918 WP_054387455.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21732.87 Da        Isoelectric Point: 4.4927

>NTDB_id=263085 DV119_RS11055 WP_000966754.1 2057689..2058285(-) (recR) [Streptococcus pneumoniae strain M16808]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDPTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=263085 DV119_RS11055 WP_000966754.1 2057689..2058285(-) (recR) [Streptococcus pneumoniae strain M16808]
ATGCTGTATCCAACACCTATTGCTAAGCTAATTGACAGTTATTCTAAGTTACCGGGTATCGGGATTAAAACGGCTACCCG
TCTGGCCTTCTATACTATTGGAATGTCTGATGACGATGTCAATGAATTTGCTAAAAATCTCCTTTCGGCGAAGAGAGAGC
TGACCTATTGTTCTATTTGTGGTCGTTTGACTGATGACGATCCTTGCTCTATCTGTACCGATCCGACTCGTGACCAGACG
ACGATTTTAGTTCTCGAAGATAGTCGCGATGTGGCAGCCATGGAGAATATCCAAGAATACCACGGGCTCTATCATGTCTT
ACATGGTCTTATTTCTCCCATGAATGGTATCAGTCCGGACGATATCAATCTCAAGAGCCTTATGACTCGTCTGATGGATA
GTGAAGTTTCAGAGGTAATCGTAGCAACCAATGCCACAGCAGATGGCGAAGCAACTTCGATGTATCTTTCACGTTTGCTC
AAGCCAGCTGGTATCAAGGTTACGCGTCTAGCACGAGGTCTCGCTGTCGGAGCGGACATTGAGTATGCGGATGAAGTGAC
ACTCTTACGAGCCATTGAAAATCGGACAGAGCTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1J688

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

99.495

100

0.995
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485