Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   C0119_RS13375 Genome accession   NZ_CP025618
Coordinates   2767149..2769386 (+) Length   745 a.a.
NCBI ID   WP_108675765.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain SGAir0122     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2762149..2774386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0119_RS13355 (C0119_08945) lnt 2762867..2764429 (+) 1563 WP_108675766.1 apolipoprotein N-acyltransferase -
  C0119_RS13360 (C0119_08940) - 2764632..2764967 (-) 336 WP_004890469.1 hypothetical protein -
  C0119_RS13365 (C0119_08935) gspG 2765252..2765719 (-) 468 WP_227499334.1 type II secretion system major pseudopilin GspG -
  C0119_RS13370 (C0119_08930) gspF 2765808..2767013 (-) 1206 WP_004813469.1 type II secretion system inner membrane protein GspF -
  C0119_RS13375 (C0119_08925) priA 2767149..2769386 (+) 2238 WP_108675765.1 primosomal protein N' Machinery gene
  C0119_RS13380 (C0119_08920) - 2769428..2771281 (+) 1854 WP_108675764.1 cation:proton antiporter -
  C0119_RS13385 (C0119_08915) hslO 2771332..2772207 (+) 876 WP_004813475.1 Hsp33 family molecular chaperone HslO -
  C0119_RS13390 (C0119_08910) - 2772669..2773133 (+) 465 WP_004813476.1 DUF2147 domain-containing protein -
  C0119_RS13395 (C0119_08905) - 2773328..2773789 (+) 462 WP_004813478.1 DUF2147 domain-containing protein -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 84410.25 Da        Isoelectric Point: 8.3664

>NTDB_id=263068 C0119_RS13375 WP_108675765.1 2767149..2769386(+) (priA) [Acinetobacter schindleri strain SGAir0122]
MSHLPISDHPASTPSVYRVRVAVPVHLFDCFDYSLSAAQYQQAEVGARVAVSFGRQNLVGVIMEKLPPDTPLDSSFKLKE
ITELLDDRALIDDKVLNLLNWSAQYYQFPIGEVVQSALPTLLRQGKPYNLLARNWKLLDDQAEAKVRRSERQQEAYKILK
LHPVGTTETVLNLAGIETATLKALEKKGICECVLEPQDFSPQPVQLAQMPLTANPEQQHAIQQVLKFKNKYQAFLLDGLT
GSGKTEVYLQIMEKVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAETGKASIVLGTRSA
IYTPMPNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVLLGSATPSIDTYALVANGKMQVLELNQRAGTALM
PKIHILDLKVAQKQHGISLHLIQEIRKRLEKKEQVLVFLNRRGYAPVLICDSCGWQAQCPNCDANFTVHHQPYQHLHCHH
CGTLHRMPDHCPSCNHTELKTLGMGTGKVEEQLNELFPDHEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKG
HHFPYVTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVTDNYRAFAKQTLEQR
QIARMPPYRYAVMIRCESRDQALNTEFLQKHAAFLRQYQDLQLEIWGPIPAPMERKAGRYQSHMVLLSADRPRLHYYVRA
WWQAMLQDKPSSMKLSLDVDPQELS

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=263068 C0119_RS13375 WP_108675765.1 2767149..2769386(+) (priA) [Acinetobacter schindleri strain SGAir0122]
ATGTCTCACTTGCCCATCTCAGATCACCCAGCCTCAACTCCTTCAGTTTATCGTGTTCGTGTTGCTGTTCCTGTTCATCT
GTTTGACTGTTTTGATTACAGTTTAAGTGCGGCACAATATCAGCAGGCTGAGGTTGGTGCGCGCGTGGCGGTGTCTTTCG
GGCGGCAGAATCTGGTTGGGGTCATTATGGAAAAGCTACCGCCAGACACTCCGCTAGATTCCAGTTTTAAACTTAAAGAG
ATTACTGAATTACTGGATGACCGGGCACTCATTGATGACAAGGTACTGAATCTGCTGAACTGGTCAGCGCAGTATTACCA
GTTCCCGATTGGTGAAGTGGTGCAAAGTGCCTTGCCAACCTTATTACGTCAGGGTAAGCCCTATAACCTGCTGGCCCGGA
ACTGGAAACTGTTAGATGACCAGGCAGAAGCCAAGGTGCGCCGTTCCGAGCGTCAGCAGGAAGCCTATAAAATTTTAAAA
TTGCATCCAGTCGGTACCACTGAAACTGTACTGAACCTGGCAGGGATCGAAACAGCTACCCTAAAAGCTTTAGAGAAAAA
AGGAATTTGTGAATGTGTGCTGGAACCTCAGGATTTCAGCCCGCAGCCTGTTCAATTGGCACAAATGCCGCTTACAGCCA
ATCCGGAACAGCAGCATGCCATTCAACAGGTACTGAAATTTAAAAATAAATATCAAGCCTTTTTACTGGATGGTCTGACC
GGCAGCGGCAAGACTGAAGTTTATTTGCAGATCATGGAAAAGGTGCTGAAACAGGGAAAACAGGTTTTAGTGCTGGTACC
GGAAATTGGCCTAACGCCACAAACCATTAGCCGGTTCCAGTCACGTTTCCATTGTCATATTGCCTTGTTACATTCTGGTT
TAAATGACTCGAAACGTCTGCAAGCCTGGCAAGCTGCAGAAACCGGTAAAGCCTCGATTGTGTTGGGTACCCGTTCTGCC
ATTTATACCCCGATGCCCAATCTAGGATTGATCATCCTGGATGAGGAACATGATCTGTCTTTTAAACAGCAGGAAGGCTT
CCGTTATCATGCCCGAGATGTTGCGCTTTATCGCGGGCATTTGCAGCAATGTCCGGTGCTTCTGGGCTCTGCCACACCCA
GCATCGATACCTATGCACTGGTTGCCAATGGCAAAATGCAGGTACTGGAACTCAACCAGCGTGCTGGTACAGCCTTAATG
CCAAAGATTCATATTTTAGATTTAAAGGTGGCACAGAAACAACATGGCATCAGCCTGCATCTGATTCAGGAGATACGCAA
ACGTCTGGAAAAAAAAGAACAGGTACTGGTGTTCCTGAACCGCCGTGGTTATGCACCCGTTTTGATTTGTGACAGCTGTG
GCTGGCAGGCACAGTGTCCAAACTGTGATGCCAATTTCACTGTACACCATCAGCCATATCAACATTTGCATTGTCACCAT
TGTGGCACCCTGCACCGTATGCCGGATCATTGTCCAAGCTGCAATCATACTGAACTCAAAACACTCGGCATGGGAACCGG
CAAGGTCGAAGAGCAATTGAATGAACTCTTTCCCGATCATGAAGTCATTCGGGTAGATCGTGATTCTACCAGTCGGGTCG
GTAGCTGGCAGAAAATCTATGACAAGATTCAGAAAAGCGAACCGGCGATTTTGCTCGGTACGCAAATGCTGGCCAAAGGT
CACCATTTCCCCTATGTCACACTGGTCGCTATTTTAGATATTGATTCTGGTCTGCTCAGTGTGGACTTCCGTGCCACCGA
ACGTACTGCCCAACTGATTGTACAGGTGGCTGGTCGTGCCGGTCGTGGCGAGCATAAAGGTGATGTCTATCTACAGACCT
TACGTCCTGATCATGCTTTGCTAAATACCTTGGTGACAGATAACTACCGGGCTTTTGCCAAACAGACCTTAGAGCAGCGT
CAGATTGCCCGCATGCCACCCTATCGCTATGCAGTGATGATCCGTTGCGAATCACGTGATCAGGCATTAAATACAGAGTT
CTTACAGAAACATGCTGCCTTCTTAAGGCAGTATCAGGACCTGCAACTGGAGATCTGGGGACCTATTCCAGCACCAATGG
AACGCAAGGCGGGCCGTTACCAATCACATATGGTACTACTGTCTGCAGACCGTCCACGTTTGCACTATTATGTCAGGGCA
TGGTGGCAAGCCATGCTGCAAGACAAACCTTCCTCAATGAAGTTAAGCCTGGATGTCGATCCACAAGAACTGAGCTAG

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(20-119)

Primosomal protein N C-terminal domain (PriA_C)

(647-741)

Type III restriction enzyme, res subunit (ResIII)

(214-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.138

99.06

0.705

Multiple sequence alignment