Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   SSA_RS07110 Genome accession   NC_009009
Coordinates   1456505..1459786 (-) Length   1093 a.a.
NCBI ID   WP_011837145.1    Uniprot ID   A3CNU0
Organism   Streptococcus sanguinis SK36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1451505..1464786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS07100 (SSA_1450) - 1452495..1452800 (-) 306 WP_011837143.1 DUF4298 domain-containing protein -
  SSA_RS07105 (SSA_1451) rexA 1452834..1456508 (-) 3675 WP_011837144.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SSA_RS07110 (SSA_1452) rexB 1456505..1459786 (-) 3282 WP_011837145.1 ATP-dependent nuclease subunit B Machinery gene
  SSA_RS07115 (SSA_1453) - 1459987..1460298 (-) 312 WP_011837146.1 hypothetical protein -
  SSA_RS07120 (SSA_1454) - 1460345..1461190 (-) 846 WP_011837147.1 DUF4300 family protein -
  SSA_RS07125 (SSA_1455) - 1461224..1461766 (-) 543 WP_011837148.1 ClbS/DfsB family four-helix bundle protein -
  SSA_RS07130 (SSA_2383) - 1461796..1462206 (-) 411 WP_011837149.1 type II toxin-antitoxin system death-on-curing family toxin -
  SSA_RS07135 (SSA_1456) - 1462203..1462439 (-) 237 WP_011837150.1 AbrB family transcriptional regulator -
  SSA_RS07140 (SSA_1457) - 1462575..1464320 (-) 1746 WP_033179178.1 glycoside hydrolase family 13 protein -

Sequence

Protein


Download         Length: 1093 a.a.        Molecular weight: 124149.70 Da        Isoelectric Point: 4.9482

>NTDB_id=26306 SSA_RS07110 WP_011837145.1 1456505..1459786(-) (rexB) [Streptococcus sanguinis SK36]
MKLLYTDIRHSLTKVLVAEAESLVAAGKRVFYIAPNSLSFEKERSVLECLKTQASFAITVTRFAQMARYFVLNDVRQGQS
LDDIGLGMLIYRTLTELDDGELKVYSRIKKDPQFIQQLMDLYHELQTAQMSFADLEFLEEPEKREDLVKIFTAVTAALNK
GDFDSSSQIAAFAQHILAGDTDEELADLALVIDGFTRFSAEEEYLVGLLHRKGVEIVIGTYASQKAYRAAFREGNLYQAS
VDFLRKLAEDYQVKPDYIPHAEAEDAFGRISKILESRYDFSESTVSLSESDRSQLQIWATMNQKEELEYVAKSIRQRVHE
GVRYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQLEDLLNLLKTGLYGDLTQE
ELDHFEQYLRFADIKGAGKLAKDFTANSQGKFDLDCLNHIRRRVMTPLQDFFKSRSQTASGLLAKFTEFVQAARLSDNLT
ALLQGESQQEQERHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTVPATVDVVKVQSYDLIEPLAAPY
VYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAELQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSM
STYLLELTAAPLSLPIIVKKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPHIS
KELKTETLQSETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQEEWTIHPDARSHGIFLHRIFEKVLQDDSSAD
FDRRLAQAMEETSREAEFESIYSESGQTRFARQLLLDTARATGRVLAHPSGIETIGEETGFGSASTPFLTLENGRAVTVS
GKVDRIDRLTKTESLGVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKGTFGAMYLQMTDPIVALKDTKTL
ADAVSQSMKPLQYKGLFVADAVKELGPLYEKNKTNLLSQEDLDLLLAYNAYLYKKAAEGILSGHFAVNPYTENGRSIAPY
VEQFKAITGFEANLHLGQARQLEKLDASKFDRRPTGDKLRQAWLEKMREEMEK

Nucleotide


Download         Length: 3282 bp        

>NTDB_id=26306 SSA_RS07110 WP_011837145.1 1456505..1459786(-) (rexB) [Streptococcus sanguinis SK36]
ATGAAATTACTTTATACAGATATTCGCCATTCTTTGACCAAGGTTTTAGTGGCTGAGGCTGAGAGCTTGGTGGCGGCTGG
TAAGCGAGTCTTTTATATTGCGCCAAATTCGCTTTCTTTTGAGAAGGAGAGGTCGGTTTTGGAGTGTCTGAAAACTCAGG
CTTCCTTTGCCATTACGGTGACGCGCTTTGCCCAGATGGCTCGGTATTTTGTCCTCAATGATGTTCGGCAAGGGCAGAGT
TTGGACGATATTGGTCTGGGAATGCTGATTTATCGGACCTTGACAGAGCTGGATGATGGAGAGCTTAAGGTCTATAGCAG
AATTAAGAAGGATCCCCAGTTTATCCAGCAGCTGATGGATCTTTATCACGAATTGCAAACTGCCCAGATGTCCTTTGCGG
ATCTGGAATTTCTCGAGGAGCCTGAGAAGCGGGAGGATCTAGTCAAGATTTTTACAGCGGTGACTGCTGCTCTGAATAAG
GGCGATTTTGATTCGTCTTCTCAGATTGCTGCTTTTGCCCAGCATATTCTGGCTGGTGATACGGATGAGGAGTTGGCAGA
TTTGGCTCTGGTCATTGATGGCTTTACTCGTTTTTCTGCCGAAGAGGAATACTTAGTCGGTCTTCTGCATCGGAAAGGTG
TGGAGATTGTCATTGGGACCTATGCCAGCCAAAAAGCCTATCGAGCAGCCTTTCGTGAGGGCAATCTCTATCAGGCCAGC
GTGGATTTTTTGAGAAAGCTGGCCGAGGACTATCAGGTCAAGCCTGACTATATCCCTCATGCGGAAGCAGAAGATGCCTT
TGGGCGGATTTCTAAGATTTTGGAGAGTCGTTATGACTTTTCAGAATCAACGGTTAGTCTTAGTGAGTCAGACCGGTCAC
AGCTTCAGATTTGGGCTACTATGAACCAGAAAGAAGAGCTAGAGTATGTGGCTAAGTCCATCCGGCAGCGGGTTCATGAA
GGTGTGCGCTATAAGGATATTCGTCTGCTTTTGGGAGATGTGGAAGCCTACCAGCTTCAGCTCAAGACTATTTTTGACCA
ATATCAGATTCCCTACTATCTGGGGCGGAGCGAGTCAATGGCCCAGCATCCGCTGGTCCAGTTTGTCGAATCTTTGGAGC
GGCTCAAACGCTATAATTTCCAACTGGAAGACCTGCTCAATCTCTTAAAGACGGGGCTCTATGGCGATTTGACTCAAGAA
GAGCTGGATCATTTTGAGCAATATCTGCGCTTTGCGGACATTAAGGGGGCAGGCAAGCTAGCCAAGGATTTCACGGCCAA
TAGCCAAGGGAAATTTGACCTAGACTGTCTCAATCATATTCGTCGCCGAGTCATGACTCCGCTGCAAGACTTTTTCAAAT
CCCGTAGTCAGACGGCGTCTGGTCTCTTAGCTAAGTTTACGGAGTTCGTCCAAGCAGCCCGTTTGTCTGACAATTTGACG
GCTCTACTACAGGGAGAAAGTCAGCAGGAGCAGGAGCGCCATGAGGAAGTCTGGAAGGCTTTCAGTCATGTCTTAGAGCA
GTTTGCTCAGGTCTTTGCAGATAGCAAGGTCAAACTGGATGATTTTCTGGCCTTGGTCTTGTCAGGTATGCTTTTGTCTA
ACTATCGGACGGTACCAGCGACGGTAGATGTGGTCAAGGTCCAGTCTTATGACCTGATAGAGCCTTTAGCAGCTCCTTAC
GTCTATGCGATTGGACTGACCCAGGAGCGTTTTCCGAAAATCGCGCAAAACAAGAGTTTGCTCAGTGATGAAGATCGGGC
TCGGCTCAATGACGCAACGGATTCTCAGGCGGAACTGCAGATTGCCAGCTCTGAGAATCTCAAGAAGAATCGCTATACAG
CGCTATCGCTGATGAATTCTGCTACCAAAGAGCTGGTCTTGTCTGCGCCAGCCTTGGTCAATGAAGTAGAGGACAGTATG
TCGACCTATCTGCTGGAATTGACTGCGGCTCCACTTTCCTTGCCCATCATTGTCAAAAAGCCTCAGGCTTCTAGTGACGA
TATTGGCAGCTACCGAGCTCTGCTTTCTCAAATCATCGAGCTCCACCAAGAGGAGATTGACCGAGAGTGGACAGCAGAGG
AGCAGACTTTTTGGGCGGTGGCTGTGCGGGTTCTCCGCAAGAAATTAGCAGCAGAAGGCATCAGCATTCCGCACATCAGC
AAGGAACTGAAAACGGAGACTCTGCAGTCGGAAACTTTGCAAGCCCTCTACCCTCAGGAGCAGCCCCTGCGACTTTCAGC
CTCTGCTCTCAATGAATATTTCCGGCATCAGTATGCTTATTTTCTCAAGTATGTTCTACGCCTGCAGGAAGAGTGGACCA
TTCATCCAGATGCTCGCAGTCATGGGATTTTCCTCCATCGGATCTTTGAAAAGGTCCTGCAGGATGATTCGTCTGCCGAT
TTTGACCGGCGTTTAGCGCAGGCCATGGAAGAGACCAGCCGAGAGGCCGAGTTTGAGAGCATCTACAGCGAGTCAGGTCA
GACCCGTTTTGCGCGTCAGCTCTTGCTAGATACGGCGCGGGCGACCGGTCGTGTGCTGGCTCATCCAAGCGGGATTGAGA
CTATTGGCGAGGAGACTGGCTTTGGCTCAGCTTCTACGCCTTTCCTGACCTTGGAAAATGGCAGAGCAGTAACCGTGAGC
GGTAAAGTGGATCGGATTGACCGTCTGACCAAGACCGAGAGTTTGGGAGTGGTGGACTATAAGTCTGGCGATATTAAGTT
CAGCTTTGAAAAGTTCTTTAATGGACTGAATTCTCAGCTGCCGACCTATTTGGCAGCGATTGAGGAGTTAGCAGACTATC
AAGAGGATAAGGGGACTTTTGGCGCCATGTATTTGCAGATGACCGATCCGATTGTGGCGCTTAAAGATACCAAGACTTTG
GCGGATGCAGTCAGTCAGTCTATGAAGCCACTCCAGTACAAGGGGCTTTTTGTGGCTGATGCTGTCAAGGAGCTTGGTCC
GCTCTATGAAAAAAATAAGACCAACTTGCTGAGCCAGGAAGACTTGGACTTGCTGCTGGCCTACAATGCTTATCTCTACA
AAAAAGCTGCAGAAGGCATTCTATCAGGCCATTTTGCAGTCAATCCTTATACAGAGAATGGGCGCAGCATTGCACCTTAT
GTGGAGCAGTTTAAGGCCATTACAGGCTTTGAAGCCAATCTCCATTTGGGACAGGCACGCCAACTGGAAAAGCTGGATGC
AAGTAAGTTTGATAGGCGGCCAACTGGTGACAAGCTACGCCAGGCCTGGCTAGAAAAGATGAGGGAGGAGATGGAAAAAT
GA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(744-1031)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3CNU0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

57.156

100

0.574