Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   C0119_RS02155 Genome accession   NZ_CP025618
Coordinates   449809..450444 (-) Length   211 a.a.
NCBI ID   WP_048881814.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain SGAir0122     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444809..455444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0119_RS02120 (C0119_05295) mlaE 444938..445717 (+) 780 WP_004809853.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  C0119_RS02125 (C0119_05290) - 445717..446394 (+) 678 WP_048881809.1 outer membrane lipid asymmetry maintenance protein MlaD -
  C0119_RS02130 (C0119_05285) - 446412..447047 (+) 636 WP_048881810.1 phospholipid-binding protein MlaC -
  C0119_RS02135 (C0119_05280) - 447060..447350 (+) 291 WP_048881811.1 STAS domain-containing protein -
  C0119_RS02140 (C0119_05275) - 447617..448630 (-) 1014 WP_004809844.1 CorA family divalent cation transporter -
  C0119_RS02145 (C0119_05270) - 448784..449374 (+) 591 WP_048881812.1 TIGR00730 family Rossman fold protein -
  C0119_RS02150 (C0119_05265) - 449406..449807 (+) 402 WP_048881813.1 NUDIX hydrolase -
  C0119_RS02155 (C0119_05260) comF 449809..450444 (-) 636 WP_048881814.1 ComF family protein Machinery gene
  C0119_RS02160 (C0119_05255) recG 450431..452476 (-) 2046 WP_004896155.1 ATP-dependent DNA helicase RecG -
  C0119_RS02165 (C0119_05250) - 452511..453329 (+) 819 WP_004896153.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24318.44 Da        Isoelectric Point: 9.5113

>NTDB_id=263047 C0119_RS02155 WP_048881814.1 449809..450444(-) (comF) [Acinetobacter schindleri strain SGAir0122]
MPMSKLIQQGKHWLGKLQPCQLCHNDYQTIYSVCQDCWNQLPWAHQTIQRQEMQVQIACHYDYPMDRLIQLFKYEQKLYL
ENLLAGTLISLKLPKVSAVVPMPISTDKLVQRGYNQSLLLAKQVAKHLQVPVWQPVSRLKQHSQKGLSRLERIEDIEAQF
QISTSSKLRYRKVLIIDDVVTTGSSIRALNQKLQELGCQQIYTACVAGAKL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=263047 C0119_RS02155 WP_048881814.1 449809..450444(-) (comF) [Acinetobacter schindleri strain SGAir0122]
ATGCCTATGTCTAAACTGATTCAGCAAGGCAAGCATTGGCTGGGCAAGTTACAGCCCTGCCAGCTTTGTCATAACGATTA
TCAAACAATTTATTCAGTATGCCAGGATTGCTGGAACCAGCTACCCTGGGCACATCAGACCATCCAGCGCCAGGAAATGC
AGGTACAGATTGCCTGCCATTATGATTATCCGATGGATCGTCTGATTCAGTTGTTCAAATATGAGCAGAAGCTTTATCTG
GAAAACTTGTTAGCAGGCACGCTTATCAGTTTAAAACTTCCAAAAGTCAGCGCAGTCGTTCCGATGCCAATCTCCACAGA
CAAACTGGTACAGCGCGGCTATAACCAGTCCTTACTGCTGGCTAAACAGGTCGCAAAGCATCTTCAAGTTCCAGTATGGC
AACCAGTGAGCCGGCTCAAACAGCATTCACAAAAAGGCTTAAGCCGCCTGGAACGGATTGAAGATATTGAAGCACAATTT
CAGATCAGTACATCATCAAAATTGCGTTATCGTAAAGTACTGATTATTGATGATGTGGTAACAACTGGCAGTTCAATTCG
TGCACTTAATCAGAAGCTCCAAGAACTTGGCTGCCAGCAAATTTATACAGCCTGTGTCGCAGGTGCAAAGCTTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.622

91.469

0.555
  comF Acinetobacter baumannii D1279779

60.104

91.469

0.55

Multiple sequence alignment