Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SSA_RS03490 Genome accession   NC_009009
Coordinates   674572..675168 (+) Length   198 a.a.
NCBI ID   WP_002897999.1    Uniprot ID   A3CLS2
Organism   Streptococcus sanguinis SK36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 669572..680168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS03470 (SSA_0686) - 669696..670139 (+) 444 WP_002896119.1 Fur family transcriptional regulator -
  SSA_RS03475 (SSA_0687) - 670607..671350 (+) 744 WP_011836660.1 hypothetical protein -
  SSA_RS03480 (SSA_0688) - 671500..672192 (+) 693 WP_002900876.1 phosphoglycerate mutase -
  SSA_RS03485 (SSA_0689) pbp2b 672402..674468 (+) 2067 WP_004187811.1 penicillin-binding protein PBP2B -
  SSA_RS03490 (SSA_0690) recR 674572..675168 (+) 597 WP_002897999.1 recombination mediator RecR Machinery gene
  SSA_RS03495 (SSA_0691) - 675388..676434 (+) 1047 WP_033179127.1 D-alanine--D-alanine ligase -
  SSA_RS03500 (SSA_0692) - 676510..677880 (+) 1371 WP_011836662.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SSA_RS03505 (SSA_0694) - 677870..678481 (+) 612 WP_011836663.1 NUDIX hydrolase N-terminal domain-containing protein -
  SSA_RS03510 (SSA_0695) - 678589..679275 (+) 687 WP_011836664.1 TIGR02206 family membrane protein -
  SSA_RS03515 (SSA_0696) - 679294..679980 (+) 687 WP_011836665.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21628.66 Da        Isoelectric Point: 4.4218

>NTDB_id=26277 SSA_RS03490 WP_002897999.1 674572..675168(+) (recR) [Streptococcus sanguinis SK36]
MLYPTPIAKLIDSFSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLAAKRELSYCSVCGNLTDEDPCAICQDQSRDQS
TILIVEDSRDVSAMENIQEYHGLYHVLHGLISPMNGVGPDDINLKSLITRLMDSEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLIRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=26277 SSA_RS03490 WP_002897999.1 674572..675168(+) (recR) [Streptococcus sanguinis SK36]
ATGCTTTACCCAACCCCTATTGCCAAGCTGATTGACAGTTTTTCAAAGCTACCCGGCATTGGCATCAAAACAGCCACTCG
ATTGGCTTTTTACACTATTGGCATGAGCGATGACGATGTCAATGAATTTGCTAAGAATCTGCTGGCTGCTAAGCGTGAGC
TGAGCTACTGCTCTGTCTGCGGCAACCTGACGGACGAAGACCCTTGTGCTATCTGCCAAGACCAGTCACGCGATCAATCA
ACTATTTTGATCGTTGAGGACAGCCGAGATGTGTCAGCCATGGAAAATATACAGGAATATCATGGACTTTATCATGTCCT
GCACGGTTTGATTTCACCTATGAACGGCGTTGGACCGGATGACATCAATCTCAAGAGTCTAATCACTCGTTTGATGGATA
GTGAAGTGACGGAGGTTATCGTCGCGACCAATGCGACTGCGGATGGCGAAGCGACCTCCATGTACATCTCTCGGGTCTTG
AAGCCCGCTGGGATTAAGGTGACTCGCCTAGCGCGTGGTTTGGCGGTTGGCTCCGACATTGAATATGCGGACGAGGTTAC
GCTGATTCGCGCTATCGAAAATCGGACGGAATTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3CLS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

88.384

100

0.884
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485

Multiple sequence alignment