Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DV870_RS25205 Genome accession   NZ_CP031215
Coordinates   4891627..4892364 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain Es_ST80_L1_NDM_10_2017     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4886627..4897364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV870_RS25170 (DV870_25170) yfiL 4886786..4887151 (-) 366 WP_001298694.1 DUF2799 domain-containing protein -
  DV870_RS25175 (DV870_25175) aroF 4887361..4888431 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  DV870_RS25180 (DV870_25180) tyrA 4888442..4889563 (+) 1122 WP_001539387.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  DV870_RS25185 (DV870_25185) pheA 4889606..4890766 (-) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  DV870_RS25190 (DV870_25190) pheL 4890865..4890912 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  DV870_RS25195 (DV870_25195) raiA 4891016..4891357 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  DV870_RS25205 (DV870_25205) comL 4891627..4892364 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  DV870_RS25210 (DV870_25210) rluD 4892499..4893479 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DV870_RS25215 (DV870_25215) yfiH 4893476..4894207 (+) 732 WP_000040138.1 purine nucleoside phosphorylase YfiH -
  DV870_RS25220 (DV870_25220) clpC 4894337..4896910 (+) 2574 WP_001539382.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=262576 DV870_RS25205 WP_000197686.1 4891627..4892364(-) (comL) [Escherichia coli strain Es_ST80_L1_NDM_10_2017]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=262576 DV870_RS25205 WP_000197686.1 4891627..4892364(-) (comL) [Escherichia coli strain Es_ST80_L1_NDM_10_2017]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376