Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   CU052_RS08875 Genome accession   NZ_CP025537
Coordinates   1828321..1828935 (-) Length   204 a.a.
NCBI ID   WP_005446268.1    Uniprot ID   A0A9X3MGU4
Organism   Vibrio harveyi strain 345     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1823321..1833935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU052_RS08865 (CU052_09265) aceF 1824424..1826325 (+) 1902 WP_101904490.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  CU052_RS08870 (CU052_09270) lpdA 1826569..1827999 (+) 1431 WP_005446266.1 dihydrolipoyl dehydrogenase -
  CU052_RS08875 (CU052_09275) opaR 1828321..1828935 (-) 615 WP_005446268.1 transcriptional regulator OpaR Regulator
  CU052_RS08880 (CU052_09280) hpt 1829257..1829787 (+) 531 WP_005446271.1 hypoxanthine phosphoribosyltransferase -
  CU052_RS08885 (CU052_09285) can 1829876..1830544 (-) 669 WP_005446273.1 carbonate dehydratase -
  CU052_RS08890 (CU052_09290) - 1830828..1832498 (+) 1671 WP_101904491.1 SulP family inorganic anion transporter -
  CU052_RS08895 (CU052_09295) - 1832732..1833649 (+) 918 WP_005446278.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23559.82 Da        Isoelectric Point: 6.0756

>NTDB_id=262411 CU052_RS08875 WP_005446268.1 1828321..1828935(-) (opaR) [Vibrio harveyi strain 345]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELSTLVSAYLDMLCIYNRDH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=262411 CU052_RS08875 WP_005446268.1 1828321..1828935(-) (opaR) [Vibrio harveyi strain 345]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTAATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGTCGTGGTGGTCACGCTGATATTGCAGAGATTGCTCAAGTTTCTGTTGCGACAGTAT
TTAACTACTTCCCAACTCGCGAAGACTTGGTGGATGAAGTTCTGAATCACGTGGTTCGTCAATTCTCGAACTTCTTATCA
GATAACATCGACTTAGACATTCATGCACGCGAGAACATCGCTAACATCACTAACGCAATGATTGAACTAGTAAGCCAAGA
TTGCCATTGGTTGAAAGTTTGGTTCGAGTGGAGTGCATCAACACGTGATGAAGTGTGGCCACTATTCGTAACGACAAACC
GCACCAACCAACTGCTGGTGCAAAACATGTTCATCAAAGCTATCGAACGTGGGGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCATGGTATTTGTTACTCTATCTTCGTACAAGCAAATCGCTCTAAGAGCGAAGCCGAGCTATC
AACACTCGTTAGTGCTTACCTAGATATGTTGTGCATCTACAACCGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

95.588

100

0.956
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696

Multiple sequence alignment