Detailed information NTG0262403

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CU052_RS08635
• Genome accession: NZ_CP025537
• Coordinates: 1782986..1783969 (+)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio harveyi strain 345
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1777986..1788969

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CU052_RS08600 (CU052_09000)	ftsB	1777992..1778273 (+)	282	WP_005452106.1	cell division protein FtsB	-
CU052_RS08605 (CU052_09005)	ispD	1778275..1778985 (+)	711	WP_038899663.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CU052_RS08610 (CU052_09010)	ispF	1779000..1779476 (+)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CU052_RS08615 (CU052_09015)	truD	1779522..1780565 (+)	1044	WP_005452109.1	tRNA pseudouridine(13) synthase TruD	-
CU052_RS08620 (CU052_09020)	surE	1780565..1781341 (+)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
CU052_RS08625 (CU052_09025)	-	1781341..1781967 (+)	627	WP_005452113.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CU052_RS08630 (CU052_09030)	-	1781982..1782905 (+)	924	WP_009698767.1	peptidoglycan DD-metalloendopeptidase family protein	-
CU052_RS08635 (CU052_09035)	rpoS	1782986..1783969 (+)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
CU052_RS08640 (CU052_09040)	mutS	1784063..1786624 (-)	2562	WP_101904480.1	DNA mismatch repair protein MutS	-
CU052_RS08645 (CU052_09045)	pncC	1786710..1787192 (+)	483	WP_101904481.1	nicotinamide-nucleotide amidase	-
CU052_RS08650 (CU052_09050)	recA	1787394..1788437 (+)	1044	WP_053050623.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=262403 CU052_RS08635 WP_005452115.1 1782986..1783969(+) (rpoS) [Vibrio harveyi strain 345]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=262403 CU052_RS08635 WP_005452115.1 1782986..1783969(+) (rpoS) [Vibrio harveyi strain 345]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACACCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856