Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   C0J00_RS03815 Genome accession   NZ_CP025536
Coordinates   744273..745502 (+) Length   409 a.a.
NCBI ID   WP_104967639.1    Uniprot ID   A0A2L0D3B7
Organism   Streptococcus pluranimalium strain TH11417     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 739273..750502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J00_RS03790 (C0J00_03795) - 740017..741297 (-) 1281 WP_104967634.1 hydroxymethylglutaryl-CoA reductase, degradative -
  C0J00_RS03795 (C0J00_03800) - 741290..742465 (-) 1176 WP_104967635.1 hydroxymethylglutaryl-CoA synthase -
  C0J00_RS03800 (C0J00_03805) - 742670..743509 (+) 840 WP_104967636.1 thymidylate synthase -
  C0J00_RS03805 (C0J00_03810) - 743579..744082 (+) 504 WP_104967637.1 dihydrofolate reductase -
  C0J00_RS03815 (C0J00_03820) clpX 744273..745502 (+) 1230 WP_104967639.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  C0J00_RS03820 (C0J00_03825) yihA 745513..746112 (+) 600 WP_104967640.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  C0J00_RS03825 (C0J00_03830) - 746120..746767 (+) 648 WP_104967641.1 deoxynucleoside kinase -
  C0J00_RS03835 (C0J00_03840) rplJ 747020..747523 (+) 504 WP_104968827.1 50S ribosomal protein L10 -
  C0J00_RS03840 (C0J00_03845) rplL 747598..747966 (+) 369 WP_018379545.1 50S ribosomal protein L7/L12 -
  C0J00_RS03845 (C0J00_03850) - 748303..748962 (+) 660 WP_104967642.1 hypothetical protein -
  C0J00_RS03850 (C0J00_03855) - 748972..750231 (+) 1260 WP_104967643.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45103.62 Da        Isoelectric Point: 4.4863

>NTDB_id=262346 C0J00_RS03815 WP_104967639.1 744273..745502(+) (clpX) [Streptococcus pluranimalium strain TH11417]
MVGNRTNDTMVHCSFCGKNQDEVKKIIAGNGVFICDECVALSQEIIKEELAEEVLADLTDVPKPKELLDILNQYVVGQDR
AKRALAVAVYNHYKRISFTESRDEEDVVLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPSQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKKVSDDSSYMQEIIAEDIQKFGLIPEFIGRLPVTAALEQLTVDDLIMI
LTEPKNALVRQYETLLSYDNVELDFDRAALESIAAKAIERKTGARGLRSIIEETMMDIMFEVPSQENVKRVRITKEAVDG
TGQPILETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=262346 C0J00_RS03815 WP_104967639.1 744273..745502(+) (clpX) [Streptococcus pluranimalium strain TH11417]
ATGGTTGGAAATCGAACAAATGATACAATGGTTCATTGCTCTTTCTGTGGCAAGAACCAAGATGAGGTTAAAAAAATTAT
TGCAGGTAATGGAGTGTTTATCTGTGATGAATGTGTAGCTTTATCACAAGAAATTATTAAAGAAGAGTTGGCTGAAGAAG
TTTTAGCTGATTTGACAGATGTCCCAAAACCAAAAGAGTTATTGGATATTTTAAACCAATATGTAGTTGGTCAAGATCGC
GCCAAACGTGCTTTAGCCGTTGCTGTTTATAATCATTACAAGCGCATTAGTTTTACAGAAAGTCGTGACGAAGAAGATGT
TGTTCTTCAAAAATCAAATATTTTGATGATTGGACCGACAGGATCAGGAAAAACTTTCCTCGCTCAGACTTTGGCTAAAA
GTCTCAATGTGCCATTTGCAATTGCGGATGCGACATCATTGACTGAGGCAGGCTATGTGGGAGAAGACGTTGAGAATATC
CTTTTAAAACTCATTCAAGCAGCAGATTATAATGTTGAGCGTGCCGAACGTGGCATTATCTATGTCGATGAAATCGATAA
AATTGCTAAAAAAGGGGAAAATGTATCTATCACGCGTGACGTTTCCGGTGAAGGGGTACAACAGGCGCTTCTTAAAATTA
TTGAAGGGACAGTTGCTAGTGTGCCACCACAAGGTGGGCGTAAACATCCTAGTCAAGAGATGATTCAAATTGACACTAAG
AATATCTTATTTATTGTTGGTGGTGCTTTTGATGGAATTGAGGAAATCGTTAAACAACGTCTTGGGGAAAAAATCATTGG
CTTTGGTCAAAATAATAAGAAAGTTTCAGATGACTCTTCATACATGCAAGAAATCATTGCTGAAGATATTCAAAAATTTG
GACTTATTCCGGAATTTATCGGTCGCTTGCCTGTGACAGCAGCACTTGAGCAGCTGACTGTTGATGATTTAATCATGATT
TTGACAGAGCCTAAGAATGCTCTTGTTCGACAATATGAAACGCTTCTTTCTTATGACAATGTAGAGTTAGACTTTGATAG
AGCCGCTTTAGAATCAATTGCGGCAAAGGCTATTGAACGTAAAACAGGTGCGCGTGGTTTACGTTCAATTATCGAAGAAA
CAATGATGGATATTATGTTTGAAGTACCAAGTCAAGAAAATGTTAAGCGTGTTCGTATCACCAAAGAAGCAGTAGATGGT
ACTGGCCAGCCAATTTTAGAAACGGCTTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0D3B7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

88.998

100

0.89
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.86

98.044

0.548

Multiple sequence alignment