Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   C0J00_RS02855 Genome accession   NZ_CP025536
Coordinates   551258..553060 (+) Length   600 a.a.
NCBI ID   WP_104967476.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain TH11417     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 546258..558060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J00_RS02830 (C0J00_02830) queA 546499..547545 (-) 1047 WP_104967472.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  C0J00_RS02835 (C0J00_02835) - 547715..548419 (+) 705 WP_104967473.1 glucosamine-6-phosphate deaminase -
  C0J00_RS02840 (C0J00_02840) - 548466..549422 (-) 957 WP_104967474.1 glutathione S-transferase family protein -
  C0J00_RS02845 (C0J00_02845) - 549525..550238 (+) 714 WP_104968812.1 pseudouridine synthase -
  C0J00_RS02850 (C0J00_02850) - 550299..551261 (+) 963 WP_104967475.1 competence protein CoiA -
  C0J00_RS02855 (C0J00_02855) pepF 551258..553060 (+) 1803 WP_104967476.1 oligoendopeptidase F Regulator
  C0J00_RS02860 (C0J00_02860) - 553087..553503 (+) 417 WP_233995860.1 hypothetical protein -
  C0J00_RS02865 (C0J00_02865) - 553708..554253 (+) 546 WP_104967477.1 GNAT family N-acetyltransferase -
  C0J00_RS02870 (C0J00_02870) - 554250..554864 (+) 615 WP_104967478.1 HAD-IA family hydrolase -
  C0J00_RS02875 (C0J00_02875) - 554974..556185 (+) 1212 WP_104967479.1 OFA family MFS transporter -
  C0J00_RS02880 (C0J00_02880) - 556984..557691 (+) 708 WP_104968814.1 O-methyltransferase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68921.53 Da        Isoelectric Point: 4.4881

>NTDB_id=262345 C0J00_RS02855 WP_104967476.1 551258..553060(+) (pepF) [Streptococcus pluranimalium strain TH11417]
MTDNRSHLKEEETWDLSTIFETDQAWEVERQALENDLKASQNDAGHLLDSAKSLLDITENALALMRRLETLYVYASMKND
QDTTIAVYQEMEAKATALSSLYSQTFAFYEPEFLAITKEQLENYKVDEPGLLAYDHYFEKLLAAKDHVLSQEAEELLAGA
SEIFGSAAETSSIFDNADVTYPWVTNDEGELVELTHGNFISLMESKNREVRKGAYEAYYGVYEQFQHTYAKTLQTNVKVH
NYKAKVRGYESARQAALSANFIPESAYDTLLAVVNKHLPLLHRYMKLRQELLGLDDLKMYDVYTPLSEHDMAITYPEALE
KSRQVLTVFGKDYSDRVDRAFSERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLIHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLEEVTDDKERFAILNHYLDGFKGTIFRQTQFAEFELAIHQADQAGQVLTSDF
LNKTYADLNEKYYGLSAEDNHEIQFEWARIPHFYYNFYVYQYATGFAAASYLADRIVHGTDKDRDNYLDYLKAGNSDYPL
NVIAKAGVDMTSADYLEGAFKVFEERLEELENLVTKLSHR

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=262345 C0J00_RS02855 WP_104967476.1 551258..553060(+) (pepF) [Streptococcus pluranimalium strain TH11417]
ATGACAGATAACCGTAGCCATCTGAAGGAAGAAGAAACTTGGGATTTAAGCACTATTTTTGAGACAGATCAAGCTTGGGA
AGTGGAACGTCAAGCCTTAGAAAACGATTTGAAAGCTTCTCAAAATGATGCGGGGCACCTTTTGGATTCAGCTAAAAGCT
TGTTGGATATTACGGAAAATGCTTTAGCTTTGATGCGTCGTTTAGAGACATTATACGTCTATGCTTCCATGAAAAATGAC
CAAGATACGACAATCGCAGTTTATCAAGAGATGGAAGCCAAGGCGACGGCCTTATCATCTCTTTATAGTCAGACTTTTGC
CTTTTATGAGCCAGAATTTTTGGCTATCACCAAAGAGCAGCTGGAAAACTATAAAGTTGACGAACCAGGCCTTCTTGCTT
ATGACCATTATTTTGAAAAATTGTTGGCAGCTAAAGACCATGTCTTGTCCCAAGAAGCAGAAGAATTACTAGCTGGTGCC
TCTGAAATTTTTGGTTCAGCAGCTGAAACCTCCTCTATTTTTGATAATGCTGATGTCACCTATCCTTGGGTAACCAATGA
TGAAGGAGAATTGGTCGAATTAACCCATGGTAACTTTATCAGCCTTATGGAATCTAAAAATCGTGAGGTTCGTAAGGGTG
CCTATGAAGCCTATTATGGTGTTTATGAGCAGTTCCAGCATACTTATGCTAAAACCCTTCAAACCAACGTTAAGGTGCAT
AATTACAAGGCTAAAGTGCGTGGGTATGAGTCTGCTCGCCAAGCTGCACTTTCAGCAAACTTTATTCCTGAGTCTGCCTA
TGACACTTTGTTAGCTGTTGTCAATAAGCATTTACCGCTTCTTCATCGCTATATGAAACTTCGTCAGGAGCTATTAGGAC
TGGATGACCTCAAAATGTACGATGTCTATACGCCACTGTCAGAGCATGATATGGCGATTACTTATCCAGAAGCTCTTGAA
AAGTCACGTCAAGTGTTAACGGTATTTGGTAAAGATTATAGCGACCGCGTTGACCGTGCTTTCTCAGAGCGTTGGATTGA
TGTACATGTTAATAAAGGGAAACGTTCGGGTGCCTATTCAGGCGGTTCTTACGATACCAATGCTTTTATGTTGCTCAACT
GGCAAGATACTTTAGACAATCTTTACACCCTTATTCATGAAACAGGCCATAGTCTGCATTCGACCTTTACACGTGAGAAT
CAGCCTTATGTTTATGGGGATTACAGTATTTTCCTAGCTGAAATTGCCTCAACGACTAATGAAAATATTTTGACCGAAAC
TCTCTTAGAAGAAGTGACTGATGATAAAGAACGTTTTGCTATTCTCAATCATTATTTGGATGGATTTAAAGGAACAATCT
TCCGTCAAACACAATTCGCTGAGTTTGAACTAGCTATCCACCAAGCTGATCAAGCAGGGCAAGTCTTGACCAGCGACTTC
CTCAATAAGACTTATGCTGATTTGAATGAGAAGTATTATGGCTTATCAGCTGAGGACAACCATGAGATTCAGTTTGAATG
GGCTCGTATCCCACATTTCTACTATAATTTCTACGTTTATCAATACGCGACAGGGTTTGCGGCTGCTTCTTACCTAGCAG
ATCGTATTGTTCATGGAACAGACAAAGACCGTGATAACTACTTAGACTATCTCAAAGCTGGTAATTCGGACTATCCACTT
AACGTCATTGCCAAAGCAGGTGTTGATATGACTAGTGCTGATTACCTTGAAGGGGCCTTCAAAGTCTTTGAAGAACGCTT
AGAAGAATTGGAAAACTTAGTTACCAAGCTCAGCCACCGTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-180)

Peptidase family M3 (Peptidase_M3)

(202-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.786

99.833

0.717

Multiple sequence alignment