Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   TERY_RS08175 Genome accession   NC_008312
Coordinates   2661209..2663380 (-) Length   723 a.a.
NCBI ID   WP_011611383.1    Uniprot ID   Q114R6
Organism   Trichodesmium erythraeum IMS101     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2656209..2668380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TERY_RS08160 (Tery_1744) - 2657404..2657994 (-) 591 WP_011611379.1 hypothetical protein -
  TERY_RS08165 (Tery_1745) - 2658181..2659314 (-) 1134 WP_011611380.1 type II secretion system F family protein -
  TERY_RS08170 (Tery_1747) - 2659750..2660862 (-) 1113 WP_011611382.1 PilT/PilU family type 4a pilus ATPase -
  TERY_RS08175 (Tery_1748) pilB/pilB1 2661209..2663380 (-) 2172 WP_011611383.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  TERY_RS08180 (Tery_1749) grpE 2664454..2665182 (+) 729 WP_011611384.1 nucleotide exchange factor GrpE -
  TERY_RS08185 (Tery_1750) dnaK 2666047..2668119 (+) 2073 WP_011611385.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 723 a.a.        Molecular weight: 81882.94 Da        Isoelectric Point: 5.2999

>NTDB_id=26221 TERY_RS08175 WP_011611383.1 2661209..2663380(-) (pilB/pilB1) [Trichodesmium erythraeum IMS101]
MAQSSSRNPRTAIVALGNLSPFGNKLVQAGLVNIEQFQHCQIESRKTGKSLTDLVEDAIGHPLPPDLIRHYKKQQLFELM
ILHGVATFDPEITPIPLEQLCYLIDKIIPIETCRRNQIIPLFSRETDLANQFVQIGKISQEKSLKALRQSSDSESSLVDE
LEKFAGDSLPSSLMKDYENQQPFVMMGMVNPHNLQALDELKNILRYRGLTLQRLVITKQDYESLINYYLEEQSKKNIVKA
KEAEQKELELESNFFESDNQLEEADDEKEVEDIAESISAAEDAPVIKAVNIILVKALTEGVSDIHVEPQEEFIRIRMRKD
GVLQEYFRFPKKVIPAITSRFKIIASLDIAERRQAQDGRIRKVFKGRTIDFRVNSLPSRYGEKIVLRILDSSSTQLGLDK
LITDKATLAMVRETASRPFGLILVTGPTGSGKSTSLYSILAERNDPSINISTAEDPIEYALPGITQCQVIREKDLTFANI
LRAFLRQDPDVLLVGETRDKETAKTAIEAALTGHLVLTTLHTNDAAGAIARLDEMGVESFMVSASLLGVVAQRLMRRVCS
KCRIEYHPEPDEFRRYGLVPSQEKDFTYYKANTIPIDQREDLKQRGELCPKCNGIGYKGRVGVYEFMKITERLQTLITQR
VPTEQIKEAAVEEGMKPLLQYSLNLVREGYTTFEEVERVTFTDSGLEAEMKRLAKQNLICKCCNAELQAEWLECPYCMTP
RFD

Nucleotide


Download         Length: 2172 bp        

>NTDB_id=26221 TERY_RS08175 WP_011611383.1 2661209..2663380(-) (pilB/pilB1) [Trichodesmium erythraeum IMS101]
ATGGCCCAAAGCTCTTCACGCAATCCACGCACCGCTATAGTTGCCCTCGGTAATCTGTCCCCTTTTGGGAATAAACTGGT
TCAGGCAGGCTTAGTTAACATTGAACAATTCCAACATTGCCAAATTGAAAGCCGTAAGACAGGCAAATCACTGACAGATT
TGGTCGAAGATGCAATAGGACATCCCTTACCGCCAGATTTAATTAGGCATTATAAAAAGCAGCAGCTATTTGAATTGATG
ATTCTACATGGTGTAGCTACTTTTGACCCAGAAATTACTCCAATACCACTAGAGCAGTTATGTTATTTAATCGACAAGAT
AATTCCTATTGAAACTTGTCGTCGGAATCAGATTATACCACTCTTTAGTCGCGAAACTGATTTAGCAAATCAGTTCGTCC
AAATAGGAAAGATAAGTCAAGAAAAAAGTTTAAAGGCACTGAGGCAAAGCAGTGATTCTGAAAGTAGTTTAGTTGATGAA
TTAGAAAAGTTTGCAGGAGATTCATTACCATCAAGTTTAATGAAAGATTATGAAAATCAGCAACCATTTGTAATGATGGG
AATGGTTAATCCTCATAATCTTCAAGCTTTGGATGAGTTAAAAAATATCTTGAGGTATCGTGGATTAACTTTACAACGCT
TGGTTATTACTAAACAAGATTATGAAAGTCTGATTAACTATTACTTAGAGGAACAAAGCAAGAAGAATATTGTTAAGGCA
AAAGAGGCAGAACAAAAAGAGCTAGAGTTAGAGTCTAATTTCTTTGAAAGTGATAATCAGTTAGAGGAAGCTGATGATGA
AAAAGAAGTAGAAGATATTGCTGAAAGTATCTCTGCTGCTGAGGATGCTCCTGTTATTAAAGCAGTAAATATTATTTTAG
TAAAAGCACTGACTGAGGGTGTATCCGATATTCATGTCGAGCCACAAGAAGAGTTTATCAGAATCAGGATGCGCAAAGAT
GGGGTATTACAGGAATATTTCCGATTTCCGAAAAAGGTGATTCCGGCTATTACTTCACGATTTAAAATTATTGCAAGTTT
AGATATTGCAGAACGAAGGCAAGCACAAGATGGTCGTATCCGCAAAGTTTTTAAGGGGCGTACAATTGACTTCCGGGTCA
ATAGTTTGCCTAGTCGCTATGGTGAAAAAATAGTCTTGCGGATTTTGGATAGCTCTAGTACCCAACTGGGGTTAGATAAG
TTAATCACAGATAAAGCCACTTTGGCAATGGTGAGGGAAACTGCTAGTCGTCCATTTGGATTAATTCTGGTGACTGGGCC
AACTGGTTCTGGTAAGTCTACTTCTCTATATTCGATTTTGGCAGAACGAAATGACCCAAGTATTAATATTAGTACGGCAG
AAGACCCAATAGAATATGCTTTGCCGGGAATTACTCAATGTCAGGTAATTAGGGAAAAGGATTTAACTTTTGCGAATATT
CTACGGGCATTTCTGCGACAGGACCCGGATGTTTTACTAGTAGGGGAAACACGAGATAAGGAAACGGCAAAAACGGCAAT
TGAAGCTGCGTTAACAGGGCACTTGGTTTTGACAACTCTACATACTAATGATGCTGCCGGAGCGATCGCTCGTCTTGATG
AAATGGGAGTGGAATCTTTTATGGTTTCAGCGTCTTTGTTGGGTGTAGTAGCACAACGCCTGATGCGTCGGGTTTGCAGT
AAATGTCGAATAGAATATCACCCTGAACCTGATGAGTTTCGTCGTTATGGTTTGGTTCCTTCTCAAGAAAAAGATTTTAC
ATACTATAAAGCAAATACTATACCAATTGACCAACGAGAAGATTTAAAACAAAGGGGAGAGTTATGTCCCAAATGTAATG
GTATTGGTTATAAAGGTCGTGTAGGTGTTTATGAGTTTATGAAAATTACTGAGCGATTACAAACTTTAATTACTCAAAGG
GTACCGACGGAACAAATTAAGGAAGCTGCAGTAGAAGAGGGGATGAAGCCTCTGTTACAATATAGTCTGAATTTGGTACG
AGAAGGTTATACAACTTTTGAGGAGGTGGAACGGGTAACATTTACTGATTCTGGTCTGGAGGCGGAAATGAAACGCTTGG
CTAAACAAAATCTAATATGTAAGTGTTGTAACGCTGAGTTACAAGCAGAATGGTTAGAATGTCCTTACTGTATGACTCCT
CGCTTTGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(292-557)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(185-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q114R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

55.119

98.617

0.544

Multiple sequence alignment