Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DUT84_RS06005 Genome accession   NZ_CP031105
Coordinates   1149536..1150273 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain AMSCJX02     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1144536..1155273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUT84_RS05990 (DUT84_05990) clpC 1144990..1147563 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  DUT84_RS05995 (DUT84_05995) yfiH 1147693..1148424 (-) 732 WP_000040114.1 purine nucleoside phosphorylase YfiH -
  DUT84_RS06000 (DUT84_06000) rluD 1148421..1149401 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DUT84_RS06005 (DUT84_06005) comL 1149536..1150273 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  DUT84_RS06015 (DUT84_06015) raiA 1150544..1150885 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  DUT84_RS06020 (DUT84_06020) pheL 1150989..1151036 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  DUT84_RS06025 (DUT84_06025) pheA 1151135..1152295 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  DUT84_RS06030 (DUT84_06030) tyrA 1152338..1153459 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  DUT84_RS06035 (DUT84_06035) aroF 1153470..1154540 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  DUT84_RS06040 (DUT84_06040) yfiL 1154750..1155115 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=262041 DUT84_RS06005 WP_000197686.1 1149536..1150273(+) (comL) [Escherichia coli strain AMSCJX02]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=262041 DUT84_RS06005 WP_000197686.1 1149536..1150273(+) (comL) [Escherichia coli strain AMSCJX02]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment