Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   CAB17_RS12145 Genome accession   NZ_CP025491
Coordinates   2777020..2777679 (-) Length   219 a.a.
NCBI ID   WP_058390698.1    Uniprot ID   -
Organism   Legionella sainthelensi strain LA01-117     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2772020..2782679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAB17_RS12130 (CAB17_18800) - 2773507..2774073 (-) 567 WP_174714502.1 endopeptidase IV -
  CAB17_RS12135 (CAB17_18805) - 2774082..2774795 (-) 714 WP_101901395.1 L,D-transpeptidase -
  CAB17_RS12140 (CAB17_18810) uvrC 2775031..2776893 (-) 1863 WP_165397092.1 excinuclease ABC subunit UvrC -
  CAB17_RS12145 (CAB17_20530) letA 2777020..2777679 (-) 660 WP_058390698.1 two-component system response regulator LetA Regulator
  CAB17_RS12150 (CAB17_18830) phhA 2777788..2778606 (-) 819 WP_101901397.1 phenylalanine 4-monooxygenase -
  CAB17_RS12155 (CAB17_18835) - 2778886..2779740 (-) 855 WP_101901399.1 hypothetical protein -
  CAB17_RS12160 (CAB17_18840) dinB 2779924..2780991 (-) 1068 WP_101901756.1 DNA polymerase IV -
  CAB17_RS12165 (CAB17_20535) - 2781053..2782327 (-) 1275 WP_101901402.1 Y-family DNA polymerase -

Sequence


Protein


Download         Length: 219 a.a.        Molecular weight: 24304.29 Da        Isoelectric Point: 5.1733

>NTDB_id=261996 CAB17_RS12145 WP_058390698.1 2777020..2777679(-) (letA) [Legionella sainthelensi strain LA01-117]
MIKVLIVDDHALVRMGIRRLLEDMSDVEVVADAESGEQALVLVKQYSPDVVLLDMKMPGIDGWEVTRRLKKSNPHAKVIA
VTAMCSDVLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLEEAQGSPFNVLSEREMQVMLMI
TSGMNVQEISDRLFLSTKTINGYRYRTFEKLGIKNDVELTYLALKHGIIENPTGLTSEE

Nucleotide


Download         Length: 660 bp        

>NTDB_id=261996 CAB17_RS12145 WP_058390698.1 2777020..2777679(-) (letA) [Legionella sainthelensi strain LA01-117]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTCGAATGGGTATTCGACGATTACTCGAAGATATGTCAGATGT
AGAAGTTGTTGCTGATGCAGAAAGTGGTGAACAAGCTTTAGTGTTAGTAAAGCAATATTCCCCTGACGTAGTTCTTTTAG
ATATGAAAATGCCTGGGATTGATGGCTGGGAAGTAACGCGTCGTCTGAAAAAATCAAATCCACATGCTAAAGTTATAGCG
GTAACTGCAATGTGTTCTGATGTATTGCCCACCCGTGTTTTGCAATTAGGGGCTATGGGATATCTCACTAAAGAATCGGG
TGCTGAAGAAATGGCCGCCGCGATAAGGAAGGTAGCTAAAGGGGAAAAATACCTTAGTGCAGAAATTGCTCAAAAAATGG
CAATCAATAGCCTGGAAGAAGCACAAGGATCTCCTTTTAATGTATTATCGGAACGAGAAATGCAAGTAATGCTGATGATT
ACAAGTGGTATGAATGTACAAGAAATCAGCGATAGGCTTTTCTTGAGTACTAAAACGATCAATGGCTATCGTTATCGCAC
CTTTGAGAAGTTAGGTATAAAAAATGATGTTGAGCTGACCTACCTAGCTTTGAAGCATGGAATCATAGAAAATCCTACTG
GTTTGACGTCAGAAGAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

87.215

100

0.872

  letA Legionella pneumophila strain ERS1305867

87.215

100

0.872


Multiple sequence alignment