Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CAB17_RS00415 Genome accession   NZ_CP025491
Coordinates   77282..77986 (-) Length   234 a.a.
NCBI ID   WP_420870562.1    Uniprot ID   -
Organism   Legionella sainthelensi strain LA01-117     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 72282..82986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAB17_RS00390 (CAB17_07000) prmC 72383..73189 (-) 807 WP_101899508.1 peptide chain release factor N(5)-glutamine methyltransferase -
  CAB17_RS00395 (CAB17_07005) prfA 73182..74270 (-) 1089 WP_027270751.1 peptide chain release factor 1 -
  CAB17_RS00400 (CAB17_07010) hemA 74254..75528 (-) 1275 WP_101899509.1 glutamyl-tRNA reductase -
  CAB17_RS00405 (CAB17_07015) - 75896..76183 (+) 288 WP_101899510.1 hypothetical protein -
  CAB17_RS00410 (CAB17_07020) - 76195..77259 (+) 1065 WP_101899511.1 M50 family metallopeptidase -
  CAB17_RS00415 (CAB17_07025) comFC 77282..77986 (-) 705 WP_420870562.1 ComF family protein Machinery gene
  CAB17_RS00420 (CAB17_07030) bioC 78025..78882 (+) 858 WP_101901544.1 malonyl-ACP O-methyltransferase BioC -
  CAB17_RS00425 (CAB17_07035) - 79089..79886 (-) 798 WP_101899513.1 LirA/MavJ family T4SS effector -
  CAB17_RS00430 (CAB17_07040) - 80017..80898 (-) 882 WP_101899514.1 polyprenyl synthetase family protein -
  CAB17_RS00435 (CAB17_07045) - 80891..81109 (-) 219 WP_101899515.1 exodeoxyribonuclease VII small subunit -
  CAB17_RS00440 (CAB17_07050) radA 81285..82637 (+) 1353 WP_101899516.1 DNA repair protein RadA -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26927.58 Da        Isoelectric Point: 9.5726

>NTDB_id=261970 CAB17_RS00415 WP_420870562.1 77282..77986(-) (comFC) [Legionella sainthelensi strain LA01-117]
MRQKIWSLTQSLRIYSICILCNQYHNNKMAVCSHCLELMPLLGPGCRYCAYPLPDTHFLVCGNCIKQPPSFDRAFIKYTF
EEPLRSLLHQFKYHEGLYLRSFLSYLIFKSLSNQADMPQCLIPVPMHSQRIKQRGFNQAAVLARSLAKKLQLPCNLFSCQ
KTLNTKPQAGLDEKQRRKNLRSAFITQKLPYQHVAIIDDLLTTGNTANELARTLKKSGVEQVDVWCCARAIEKQ

Nucleotide


Download         Length: 705 bp        

>NTDB_id=261970 CAB17_RS00415 WP_420870562.1 77282..77986(-) (comFC) [Legionella sainthelensi strain LA01-117]
GTGCGTCAAAAAATATGGAGTTTAACACAAAGTTTACGTATATACTCAATATGTATCTTATGTAATCAATACCACAACAA
CAAAATGGCCGTGTGTTCACATTGCCTTGAACTCATGCCTTTGTTAGGTCCTGGTTGCCGCTATTGTGCTTATCCCTTAC
CTGACACCCATTTTCTCGTCTGCGGAAATTGTATTAAACAACCCCCCTCTTTTGATAGAGCATTCATAAAGTACACTTTT
GAAGAGCCACTGCGAAGCCTTTTACATCAATTCAAATATCATGAGGGGCTTTATCTTAGATCTTTTTTAAGCTATTTAAT
TTTTAAATCACTATCAAACCAAGCAGATATGCCTCAGTGTTTGATCCCTGTCCCCATGCATTCACAACGAATCAAACAAC
GTGGATTTAACCAAGCCGCCGTCTTAGCTCGTTCTTTAGCTAAAAAATTACAGCTCCCTTGTAATTTATTCAGTTGCCAA
AAAACGCTCAATACAAAACCTCAAGCAGGTCTGGATGAAAAACAAAGGAGAAAAAATTTACGCTCTGCCTTTATAACCCA
AAAACTTCCTTATCAGCATGTCGCCATTATCGATGATCTTCTTACCACCGGTAATACCGCAAATGAACTGGCGCGCACCT
TAAAGAAATCCGGAGTAGAGCAGGTGGATGTTTGGTGTTGTGCACGCGCCATAGAAAAACAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

60.944

99.573

0.607
  comFC Legionella pneumophila strain ERS1305867

61.538

83.333

0.513

Multiple sequence alignment