Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA2   Type   Machinery gene
Locus tag   NMC_RS09945 Genome accession   NC_008767
Coordinates   1917143..1917838 (-) Length   231 a.a.
NCBI ID   WP_002248140.1    Uniprot ID   -
Organism   Neisseria meningitidis FAM18     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1912143..1922838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMC_RS09930 (NMC1882) - 1913331..1914137 (-) 807 WP_002223355.1 cytochrome C assembly family protein -
  NMC_RS09935 (NMC1883) ffh 1914357..1915727 (+) 1371 WP_002223353.1 signal recognition particle protein -
  NMC_RS09940 (NMC1884) - 1916101..1917066 (+) 966 WP_002216744.1 IS30-like element IS1655 family transposase -
  NMC_RS09945 (NMC1885) dsbA2 1917143..1917838 (-) 696 WP_002248140.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  NMC_RS09950 (NMC1886) - 1918009..1918668 (-) 660 WP_002248141.1 NYN domain-containing protein -
  NMC_RS09955 (NMC1887) - 1918871..1920982 (-) 2112 WP_002248142.1 TonB-dependent receptor -
  NMC_RS09960 (NMC1889) - 1921168..1921773 (-) 606 WP_002230218.1 nitroreductase family protein -
  NMC_RS09965 (NMC1890) - 1921822..1922220 (-) 399 WP_002216361.1 DoxX family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 25378.89 Da        Isoelectric Point: 5.3625

>NTDB_id=26196 NMC_RS09945 WP_002248140.1 1917143..1917838(-) (dsbA2) [Neisseria meningitidis FAM18]
MKLKTLALTSLTLLALAACSKQAETSVPADSVQSSSSAPAAPAPLTEGVNYTVLSTPIPQQQAGKVEVLEFFGYFCPHCA
HLEPVLSEHIKTFKDDTYMRREHVVWGDEMKPLARLAAAVEMAGESDKANSHIFDAMVNQKINLADTDTLKKWLSEQTAF
DGKKVLAAFEASESQARAAQMEELTNKFQISGTPTVIVGGKYQVEFKDWQSGMTTIDQLVDKVREEQKKPQ

Nucleotide


Download         Length: 696 bp        

>NTDB_id=26196 NMC_RS09945 WP_002248140.1 1917143..1917838(-) (dsbA2) [Neisseria meningitidis FAM18]
ATGAAACTGAAAACCTTAGCTTTGACTTCATTGACCCTGTTGGCATTGGCCGCTTGTAGCAAACAGGCTGAAACCAGCGT
TCCGGCAGACAGCGTCCAAAGCAGCTCATCTGCTCCGGCAGCCCCAGCCCCATTGACCGAAGGCGTGAACTACACTGTAT
TGTCCACGCCTATCCCGCAACAGCAGGCCGGCAAAGTCGAAGTCTTGGAATTTTTCGGCTACTTCTGCCCGCATTGCGCC
CATCTTGAGCCGGTCTTGAGCGAGCACATCAAAACGTTTAAAGACGATACCTATATGCGCCGGGAGCATGTCGTGTGGGG
TGATGAAATGAAACCTTTGGCACGTTTGGCGGCCGCAGTGGAAATGGCCGGTGAATCAGATAAAGCCAACAGCCATATTT
TCGATGCGATGGTTAATCAAAAAATCAATCTGGCCGATACCGATACCCTGAAAAAATGGCTGTCCGAGCAAACAGCGTTT
GACGGCAAAAAAGTATTGGCTGCATTTGAGGCTTCTGAAAGCCAAGCGCGTGCGGCTCAAATGGAAGAGTTGACCAATAA
ATTCCAAATCAGCGGCACACCGACTGTGATCGTCGGCGGCAAATACCAAGTTGAATTTAAAGACTGGCAGTCCGGTATGA
CCACGATTGACCAGTTGGTGGATAAAGTACGCGAAGAGCAGAAAAAGCCGCAATAA

Domains

Predicted by InterProScan.

Thioredoxin (Thioredoxin_4)

(64-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA2 Neisseria meningitidis MC58

97.835

100

0.978
  dsbA1 Neisseria meningitidis MC58

70.815

100

0.714