Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CYK59_RS04925 Genome accession   NZ_CP025476
Coordinates   919282..920148 (+) Length   288 a.a.
NCBI ID   WP_126133325.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain IRG2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 914282..925148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYK59_RS04895 (CYK59_04915) - 915034..915939 (+) 906 WP_338142275.1 SGNH/GDSL hydrolase family protein -
  CYK59_RS04900 (CYK59_04920) - 915954..916586 (+) 633 WP_004270315.1 YpmS family protein -
  CYK59_RS04905 (CYK59_04925) - 916596..916820 (+) 225 WP_004270292.1 YozE family protein -
  CYK59_RS04910 (CYK59_04930) lepB 916841..917374 (+) 534 WP_035186360.1 signal peptidase I -
  CYK59_RS04915 (CYK59_04935) ylqF 917619..918470 (+) 852 WP_162145192.1 ribosome biogenesis GTPase YlqF -
  CYK59_RS04920 (CYK59_04940) - 918470..919231 (+) 762 WP_039099416.1 ribonuclease HII -
  CYK59_RS04925 (CYK59_04945) dprA 919282..920148 (+) 867 WP_126133325.1 DNA-processing protein DprA Machinery gene
  CYK59_RS04930 (CYK59_04950) - 920243..921097 (+) 855 WP_126133326.1 SDR family oxidoreductase -
  CYK59_RS04935 (CYK59_04955) - 921130..921573 (+) 444 WP_004270319.1 Rrf2 family transcriptional regulator -
  CYK59_RS04940 (CYK59_04960) topA 921808..923892 (+) 2085 WP_004270304.1 type I DNA topoisomerase -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31704.70 Da        Isoelectric Point: 7.9596

>NTDB_id=261904 CYK59_RS04925 WP_126133325.1 919282..920148(+) (dprA) [Latilactobacillus curvatus strain IRG2]
MLTKKQLLLKVHLADGFGPISELRLAAWLVTSHNWALSALEIAQIACLPERYWLTFQTSFDSLALQQKCATHERYVQYLT
ILEADYPQRLLETHCPPTVLFYRGDLSVLKQPCVAVVGARQATEYTKQALQHLLGLPQTTTIISGLAQGADAMAHEVALQ
KGLRPIGVIGTGLNCYYPPQNEHLQQAVAEKGLLISEYGLDVTAKKHHFPARNRIIAGLCHSLVVTEARKKSGSLITANL
ALQANRNVYALPGQVNHSLSAGCNQLILAGATPLLNQQLLLDELHYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=261904 CYK59_RS04925 WP_126133325.1 919282..920148(+) (dprA) [Latilactobacillus curvatus strain IRG2]
GTGTTGACTAAAAAGCAATTATTATTGAAAGTACACCTGGCAGATGGGTTTGGCCCCATCAGTGAATTACGCTTAGCCGC
ATGGTTAGTAACGAGTCACAATTGGGCTTTATCGGCATTGGAGATTGCGCAGATTGCGTGTTTACCGGAGCGATATTGGC
TGACCTTTCAGACTAGTTTTGACAGTCTAGCTCTGCAACAGAAGTGTGCCACGCATGAACGTTATGTTCAGTATCTGACG
ATTCTAGAAGCAGATTATCCGCAACGGTTGTTAGAAACCCATTGTCCGCCAACAGTTTTATTTTATCGCGGCGATTTAAG
TGTTTTGAAACAGCCATGTGTTGCGGTGGTTGGTGCGCGGCAAGCCACGGAGTATACTAAGCAAGCCCTGCAGCATTTAT
TGGGATTACCACAAACAACGACGATTATCAGTGGTTTAGCTCAAGGGGCGGATGCGATGGCGCATGAAGTTGCACTCCAA
AAAGGGTTACGACCGATTGGCGTGATTGGAACGGGCTTGAATTGTTATTACCCACCACAAAACGAACACTTGCAACAGGC
GGTCGCTGAAAAAGGGTTATTGATATCAGAATACGGTTTGGACGTAACGGCTAAGAAGCACCACTTCCCAGCCCGAAATC
GGATTATTGCCGGACTTTGTCATAGTTTAGTGGTCACAGAAGCCCGCAAAAAAAGTGGTAGCTTAATCACCGCTAATTTA
GCATTACAAGCCAATCGTAACGTATATGCCTTACCGGGCCAGGTTAATCATTCATTATCGGCAGGCTGTAATCAACTGAT
TTTAGCCGGTGCAACGCCGCTTTTAAATCAACAATTGTTATTGGACGAGTTGCATTATTTTGATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

76.389

100

0.764
  dprA Legionella pneumophila strain ERS1305867

36.177

100

0.368

Multiple sequence alignment