Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CYK59_RS03855 | Genome accession | NZ_CP025476 |
| Coordinates | 704602..705114 (+) | Length | 170 a.a. |
| NCBI ID | WP_126133249.1 | Uniprot ID | - |
| Organism | Latilactobacillus curvatus strain IRG2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 693309..744598 | 704602..705114 | within | 0 |
Gene organization within MGE regions
Location: 693309..744598
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CYK59_RS03755 (CYK59_03765) | - | 693309..694523 (-) | 1215 | WP_126133231.1 | tyrosine-type recombinase/integrase | - |
| CYK59_RS03760 (CYK59_03770) | - | 694635..696167 (-) | 1533 | WP_126133232.1 | glucosyltransferase domain-containing protein | - |
| CYK59_RS03765 (CYK59_03775) | - | 696250..696651 (-) | 402 | WP_126133233.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CYK59_RS03770 (CYK59_03780) | - | 696657..696977 (-) | 321 | WP_126133234.1 | helix-turn-helix domain-containing protein | - |
| CYK59_RS03775 (CYK59_03785) | - | 697232..697444 (+) | 213 | WP_126133235.1 | transcriptional regulator | - |
| CYK59_RS10235 | - | 697458..697613 (+) | 156 | WP_164545991.1 | hypothetical protein | - |
| CYK59_RS03780 (CYK59_03790) | - | 697603..697986 (-) | 384 | WP_164545992.1 | DUF2513 domain-containing protein | - |
| CYK59_RS03785 (CYK59_03795) | - | 698027..698728 (+) | 702 | WP_126133237.1 | Rha family transcriptional regulator | - |
| CYK59_RS03790 (CYK59_03800) | - | 698731..698916 (+) | 186 | WP_126133238.1 | hypothetical protein | - |
| CYK59_RS03795 (CYK59_03805) | - | 698913..699194 (-) | 282 | WP_126133239.1 | hypothetical protein | - |
| CYK59_RS03800 (CYK59_03810) | - | 699320..699517 (+) | 198 | WP_126133240.1 | helix-turn-helix domain-containing protein | - |
| CYK59_RS03805 (CYK59_03815) | - | 699520..699801 (+) | 282 | WP_126133241.1 | hypothetical protein | - |
| CYK59_RS03810 (CYK59_03820) | - | 699906..700112 (+) | 207 | WP_126133242.1 | hypothetical protein | - |
| CYK59_RS03815 (CYK59_03825) | - | 700195..700554 (-) | 360 | WP_126133243.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CYK59_RS03820 (CYK59_03830) | - | 700761..701030 (+) | 270 | WP_126133244.1 | hypothetical protein | - |
| CYK59_RS03825 (CYK59_03835) | - | 701033..701671 (+) | 639 | WP_126133245.1 | ERF family protein | - |
| CYK59_RS03830 (CYK59_03840) | - | 701668..702354 (+) | 687 | WP_126133246.1 | putative HNHc nuclease | - |
| CYK59_RS10420 | - | 702344..703039 (+) | 696 | WP_164545993.1 | conserved phage C-terminal domain-containing protein | - |
| CYK59_RS03840 (CYK59_03850) | - | 703152..703856 (+) | 705 | WP_241231960.1 | ATP-binding protein | - |
| CYK59_RS03845 (CYK59_03855) | - | 703965..704390 (+) | 426 | WP_126133247.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CYK59_RS03850 (CYK59_03860) | - | 704368..704589 (+) | 222 | WP_126133248.1 | hypothetical protein | - |
| CYK59_RS03855 (CYK59_03865) | ssb | 704602..705114 (+) | 513 | WP_126133249.1 | single-stranded DNA-binding protein | Machinery gene |
| CYK59_RS03860 (CYK59_03870) | - | 705126..705458 (+) | 333 | WP_126133250.1 | hypothetical protein | - |
| CYK59_RS03865 (CYK59_03875) | - | 705461..705652 (+) | 192 | WP_126133251.1 | hypothetical protein | - |
| CYK59_RS10245 | - | 706078..706230 (+) | 153 | WP_164545994.1 | hypothetical protein | - |
| CYK59_RS03870 (CYK59_03880) | - | 706308..706739 (+) | 432 | WP_126133252.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| CYK59_RS03880 (CYK59_03890) | - | 707124..707645 (+) | 522 | WP_126133253.1 | hypothetical protein | - |
| CYK59_RS03885 (CYK59_03895) | - | 707629..707931 (+) | 303 | WP_126133254.1 | hypothetical protein | - |
| CYK59_RS10545 | - | 708029..708157 (+) | 129 | WP_004271280.1 | hypothetical protein | - |
| CYK59_RS03890 (CYK59_03900) | - | 708436..708747 (+) | 312 | WP_076632024.1 | bacteriocin immunity protein | - |
| CYK59_RS03895 (CYK59_03905) | - | 709132..709386 (+) | 255 | WP_126133255.1 | hypothetical protein | - |
| CYK59_RS10645 (CYK59_03910) | - | 709370..710152 (+) | 783 | Protein_729 | HNH endonuclease | - |
| CYK59_RS03905 (CYK59_03915) | - | 710310..710756 (+) | 447 | WP_126133256.1 | P27 family phage terminase small subunit | - |
| CYK59_RS03910 (CYK59_03920) | - | 710771..712456 (+) | 1686 | WP_126133598.1 | terminase large subunit | - |
| CYK59_RS03915 (CYK59_03930) | - | 712681..713907 (+) | 1227 | WP_126133257.1 | phage portal protein | - |
| CYK59_RS03920 (CYK59_03935) | - | 713864..714493 (+) | 630 | WP_126133258.1 | HK97 family phage prohead protease | - |
| CYK59_RS03925 (CYK59_03940) | - | 714542..715747 (+) | 1206 | WP_126133259.1 | phage major capsid protein | - |
| CYK59_RS03930 (CYK59_03945) | - | 715867..716196 (+) | 330 | WP_126133260.1 | head-tail connector protein | - |
| CYK59_RS03935 (CYK59_03950) | - | 716183..716518 (+) | 336 | WP_164545995.1 | phage head closure protein | - |
| CYK59_RS03940 (CYK59_03955) | - | 716515..716877 (+) | 363 | WP_126133261.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| CYK59_RS03945 (CYK59_03960) | - | 716870..717292 (+) | 423 | WP_126133262.1 | hypothetical protein | - |
| CYK59_RS03950 (CYK59_03965) | - | 717279..717848 (+) | 570 | WP_126133263.1 | major tail protein | - |
| CYK59_RS03955 (CYK59_03970) | gpG | 717939..718241 (+) | 303 | WP_126133264.1 | phage tail assembly chaperone G | - |
| CYK59_RS03960 (CYK59_03975) | - | 718462..722793 (+) | 4332 | WP_126133265.1 | phage tail tape measure protein | - |
| CYK59_RS03965 (CYK59_03980) | - | 722793..724244 (+) | 1452 | WP_126133266.1 | distal tail protein Dit | - |
| CYK59_RS03970 (CYK59_03990) | - | 724413..725069 (-) | 657 | WP_126133267.1 | hypothetical protein | - |
| CYK59_RS03975 (CYK59_03995) | - | 725129..730159 (+) | 5031 | WP_126133268.1 | phage tail spike protein | - |
| CYK59_RS03980 (CYK59_04000) | - | 730172..730438 (+) | 267 | WP_126133269.1 | hypothetical protein | - |
| CYK59_RS03985 (CYK59_04005) | - | 730445..730702 (+) | 258 | WP_126133270.1 | hemolysin XhlA family protein | - |
| CYK59_RS03990 (CYK59_04010) | - | 730709..730918 (+) | 210 | WP_096584523.1 | phage holin | - |
| CYK59_RS03995 (CYK59_04015) | - | 730915..731823 (+) | 909 | WP_126133271.1 | SH3 domain-containing protein | - |
| CYK59_RS10250 | - | 732088..732252 (+) | 165 | WP_164545996.1 | hypothetical protein | - |
| CYK59_RS04000 (CYK59_04020) | - | 732254..732868 (+) | 615 | WP_126133272.1 | GNAT family N-acetyltransferase | - |
| CYK59_RS04005 (CYK59_04025) | - | 732910..733449 (-) | 540 | WP_126133273.1 | helix-turn-helix transcriptional regulator | - |
| CYK59_RS04010 (CYK59_04030) | - | 733463..733897 (-) | 435 | WP_126133274.1 | hypothetical protein | - |
| CYK59_RS04015 (CYK59_04035) | - | 734020..734475 (-) | 456 | WP_126133275.1 | hypothetical protein | - |
| CYK59_RS04020 (CYK59_04040) | - | 734478..734738 (-) | 261 | WP_126133276.1 | hypothetical protein | - |
| CYK59_RS10255 | - | 734757..734930 (-) | 174 | WP_164545997.1 | hypothetical protein | - |
| CYK59_RS04025 (CYK59_04045) | - | 735197..735442 (+) | 246 | WP_004271157.1 | hypothetical protein | - |
| CYK59_RS04030 (CYK59_04050) | ybaK | 735501..736007 (-) | 507 | WP_076800120.1 | Cys-tRNA(Pro) deacylase | - |
| CYK59_RS10260 | - | 736121..736294 (+) | 174 | WP_004271151.1 | hypothetical protein | - |
| CYK59_RS04035 (CYK59_04055) | - | 736356..736745 (+) | 390 | WP_076800122.1 | hypothetical protein | - |
| CYK59_RS04040 (CYK59_04060) | - | 736896..737390 (+) | 495 | WP_035186990.1 | DUF3013 family protein | - |
| CYK59_RS04045 (CYK59_04065) | prmA | 737421..738368 (+) | 948 | WP_076800126.1 | 50S ribosomal protein L11 methyltransferase | - |
| CYK59_RS04050 (CYK59_04070) | - | 738381..739136 (+) | 756 | WP_126133277.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| CYK59_RS04055 (CYK59_04075) | - | 739173..739514 (+) | 342 | WP_004271163.1 | hypothetical protein | - |
| CYK59_RS04060 (CYK59_04080) | - | 739604..741835 (+) | 2232 | WP_089556863.1 | RelA/SpoT family protein | - |
| CYK59_RS04065 (CYK59_04085) | dtd | 741848..742297 (+) | 450 | WP_039099315.1 | D-aminoacyl-tRNA deacylase | - |
| CYK59_RS04070 (CYK59_04090) | - | 742301..742927 (+) | 627 | WP_076787717.1 | HAD-IA family hydrolase | - |
| CYK59_RS04075 (CYK59_04095) | - | 742976..743326 (-) | 351 | WP_126133278.1 | DUF3397 family protein | - |
| CYK59_RS04080 (CYK59_04100) | - | 743454..743576 (+) | 123 | WP_004270707.1 | DUF4044 domain-containing protein | - |
| CYK59_RS04085 (CYK59_04105) | - | 743668..744598 (-) | 931 | Protein_769 | IS30-like element ISLpl1 family transposase | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18601.12 Da Isoelectric Point: 5.1661
>NTDB_id=261899 CYK59_RS03855 WP_126133249.1 704602..705114(+) (ssb) [Latilactobacillus curvatus strain IRG2]
MINRVVLVGRLTKDPELKYTSSGTAVGTFSLAVNRQFTNSNGDREADFINCVIWRKSAENFANFTHKGSLVGIDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNSNQSNGSQQSGFTSHQQSGNPSAANNTQAGPFANNGQA
IDISDDDLPF
MINRVVLVGRLTKDPELKYTSSGTAVGTFSLAVNRQFTNSNGDREADFINCVIWRKSAENFANFTHKGSLVGIDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNSNQSNGSQQSGFTSHQQSGNPSAANNTQAGPFANNGQA
IDISDDDLPF
Nucleotide
Download Length: 513 bp
>NTDB_id=261899 CYK59_RS03855 WP_126133249.1 704602..705114(+) (ssb) [Latilactobacillus curvatus strain IRG2]
ATGATTAATAGAGTTGTATTAGTTGGACGATTGACAAAAGACCCAGAACTTAAATATACGTCATCAGGCACAGCGGTTGG
GACGTTTAGCTTAGCTGTTAACCGCCAGTTCACAAATTCCAATGGTGATCGCGAAGCGGACTTTATCAACTGTGTCATCT
GGCGTAAATCAGCGGAAAACTTCGCAAACTTCACCCACAAAGGTTCACTAGTCGGGATTGATGGACGTCTGCAAACGAGA
AACTATGAAAACCAACAAGGTCAACGGGTATACGTAACCGAAGTGGTCGTTGATAACTTCTCATTGCTAGAATCACGGAC
AACAACGGAGCAGCGGCAAGGGGATGGCGCAAGCCAAAACTTTAACAGCAATCAAAGCAACGGTAGCCAACAATCTGGAT
TTACCAGCCATCAACAATCGGGTAATCCATCAGCTGCAAATAACACTCAAGCTGGTCCATTTGCAAATAATGGTCAAGCA
ATTGATATTTCAGATGACGATTTGCCATTCTAG
ATGATTAATAGAGTTGTATTAGTTGGACGATTGACAAAAGACCCAGAACTTAAATATACGTCATCAGGCACAGCGGTTGG
GACGTTTAGCTTAGCTGTTAACCGCCAGTTCACAAATTCCAATGGTGATCGCGAAGCGGACTTTATCAACTGTGTCATCT
GGCGTAAATCAGCGGAAAACTTCGCAAACTTCACCCACAAAGGTTCACTAGTCGGGATTGATGGACGTCTGCAAACGAGA
AACTATGAAAACCAACAAGGTCAACGGGTATACGTAACCGAAGTGGTCGTTGATAACTTCTCATTGCTAGAATCACGGAC
AACAACGGAGCAGCGGCAAGGGGATGGCGCAAGCCAAAACTTTAACAGCAATCAAAGCAACGGTAGCCAACAATCTGGAT
TTACCAGCCATCAACAATCGGGTAATCCATCAGCTGCAAATAACACTCAAGCTGGTCCATTTGCAAATAATGGTCAAGCA
ATTGATATTTCAGATGACGATTTGCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
91.765 |
100 |
0.918 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.429 |
100 |
0.571 |