Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CYK58_RS05865 Genome accession   NZ_CP025474
Coordinates   1213101..1213505 (-) Length   134 a.a.
NCBI ID   WP_126131362.1    Uniprot ID   -
Organism   Helicobacter pylori strain H-137     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1208101..1218505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYK58_RS05815 (CYK58_05810) - 1208300..1209367 (-) 1068 WP_126131356.1 hypothetical protein -
  CYK58_RS05820 (CYK58_05815) - 1209357..1210142 (-) 786 WP_126131357.1 hypothetical protein -
  CYK58_RS05825 (CYK58_05820) - 1210142..1210528 (-) 387 Protein_1114 DUF1294 domain-containing protein -
  CYK58_RS05830 - 1210442..1210663 (+) 222 WP_126131358.1 hypothetical protein -
  CYK58_RS05840 (CYK58_05830) - 1210858..1211250 (-) 393 WP_241234367.1 hypothetical protein -
  CYK58_RS05850 (CYK58_05840) - 1211541..1212101 (-) 561 WP_126131360.1 hypothetical protein -
  CYK58_RS05855 (CYK58_05845) - 1212085..1212423 (-) 339 WP_000699911.1 hypothetical protein -
  CYK58_RS05860 (CYK58_05850) - 1212613..1213044 (-) 432 WP_126131361.1 tetratricopeptide repeat protein -
  CYK58_RS05865 (CYK58_05855) dprB 1213101..1213505 (-) 405 WP_126131362.1 Holliday junction resolvase RuvX Machinery gene
  CYK58_RS05870 (CYK58_05860) dprA 1213502..1214302 (-) 801 WP_126131363.1 DNA-processing protein DprA Machinery gene
  CYK58_RS05875 (CYK58_05865) minE 1214314..1214547 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  CYK58_RS05880 (CYK58_05870) minD 1214544..1215350 (-) 807 WP_015643076.1 septum site-determining protein MinD -
  CYK58_RS05885 (CYK58_05875) ilvC 1215375..1216367 (-) 993 WP_031247928.1 ketol-acid reductoisomerase -
  CYK58_RS05895 (CYK58_05885) - 1216616..1217398 (+) 783 WP_126131364.1 NAD+ synthase -
  CYK58_RS05900 (CYK58_05890) - 1217395..1218333 (+) 939 WP_126131365.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15338.89 Da        Isoelectric Point: 8.6962

>NTDB_id=261872 CYK58_RS05865 WP_126131362.1 1213101..1213505(-) (dprB) [Helicobacter pylori strain H-137]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNKNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFEGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=261872 CYK58_RS05865 WP_126131362.1 1213101..1213505(-) (dprB) [Helicobacter pylori strain H-137]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAAAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTGAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.697

98.507

0.933

Multiple sequence alignment