Detailed information NTG0261863

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: CYK58_RS00765
• Genome accession: NZ_CP025474
• Coordinates: 153827..154792 (+)
• Length: 321 a.a.
• NCBI ID: WP_126130757.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain H-137
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 148827..159792

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CYK58_RS00735 (CYK58_00735)	panD	150234..150584 (+)	351	WP_126130756.1	aspartate 1-decarboxylase	-
CYK58_RS00740 (CYK58_00740)	-	150595..150888 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
CYK58_RS00745 (CYK58_00745)	-	150888..151883 (+)	996	WP_126131605.1	PDZ domain-containing protein	-
CYK58_RS00750 (CYK58_00750)	comB6	151891..152946 (+)	1056	WP_126131604.1	P-type conjugative transfer protein TrbL	Machinery gene
CYK58_RS00755 (CYK58_00755)	comB7	152962..153087 (+)	126	WP_021307643.1	hypothetical protein	Machinery gene
CYK58_RS00760 (CYK58_00760)	comB8	153084..153827 (+)	744	WP_000660533.1	virB8 family protein	Machinery gene
CYK58_RS00765 (CYK58_00765)	comB9	153827..154792 (+)	966	WP_126130757.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
CYK58_RS00770 (CYK58_00770)	comB10	154785..155921 (+)	1137	WP_126130758.1	DNA type IV secretion system protein ComB10	Machinery gene
CYK58_RS00775 (CYK58_00775)	-	155991..157403 (+)	1413	WP_126130759.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
CYK58_RS00780 (CYK58_00780)	gmd	157444..158589 (+)	1146	WP_126130760.1	GDP-mannose 4,6-dehydratase	-
CYK58_RS00785 (CYK58_00785)	-	158582..159514 (+)	933	WP_126130761.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36895.49 Da
• Isoelectric Point: 9.5634

>NTDB_id=261863 CYK58_RS00765 WP_126130757.1 153827..154792(+) (comB9) [Helicobacter pylori strain H-137]
MRKVLYALVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLEKAPTNNNKPLKEEKEETKEEETITIGDNTNAMRIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=261863 CYK58_RS00765 WP_126130757.1 153827..154792(+) (comB9) [Helicobacter pylori strain H-137]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTCTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTCATCAAGCCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAATTCAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAGAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTAAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCAGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATTCGTTTTGTCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.718	100	0.931