Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | CYK58_RS00280 | Genome accession | NZ_CP025474 |
| Coordinates | 62774..63349 (+) | Length | 191 a.a. |
| NCBI ID | WP_126130705.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain H-137 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 57774..68349
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CYK58_RS00255 (CYK58_00255) | uvrD | 58465..60510 (+) | 2046 | WP_206435441.1 | DNA helicase UvrD | - |
| CYK58_RS00260 (CYK58_00260) | flgA | 60507..61163 (+) | 657 | WP_126130703.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| CYK58_RS00265 (CYK58_00265) | - | 61173..61736 (+) | 564 | WP_000780124.1 | UbiX family flavin prenyltransferase | - |
| CYK58_RS00270 (CYK58_00270) | coaD | 61736..62209 (+) | 474 | WP_001169241.1 | pantetheine-phosphate adenylyltransferase | - |
| CYK58_RS00275 (CYK58_00275) | tmk | 62211..62786 (+) | 576 | WP_126130704.1 | dTMP kinase | - |
| CYK58_RS00280 (CYK58_00280) | comFC | 62774..63349 (+) | 576 | WP_126130705.1 | ComF family protein | Machinery gene |
| CYK58_RS00285 (CYK58_00285) | - | 63382..65421 (+) | 2040 | WP_126130706.1 | N-6 DNA methylase | - |
| CYK58_RS00290 (CYK58_00290) | - | 65418..66059 (+) | 642 | WP_126130707.1 | restriction endonuclease subunit S | - |
| CYK58_RS00295 (CYK58_00295) | - | 66086..66628 (+) | 543 | WP_241234374.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21317.98 Da Isoelectric Point: 9.1108
>NTDB_id=261859 CYK58_RS00280 WP_126130705.1 62774..63349(+) (comFC) [Helicobacter pylori strain H-137]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRANYTISYAGKSLEFRANNPRNFTFKGDKSLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRANYTISYAGKSLEFRANNPRNFTFKGDKSLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=261859 CYK58_RS00280 WP_126130705.1 62774..63349(+) (comFC) [Helicobacter pylori strain H-137]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAACTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGTGTTTAAGGGCTAATTATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAACAACCCACGGAATTTCACCTTCAAAGGCGATAAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCGATCGCACTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAACTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGTGTTTAAGGGCTAATTATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAACAACCCACGGAATTTCACCTTCAAAGGCGATAAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCGATCGCACTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |