Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DR994_RS09580 Genome accession   NZ_CP030927
Coordinates   1847160..1848260 (+) Length   366 a.a.
NCBI ID   WP_096811730.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1842160..1853260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR994_RS09555 (DR994_09785) pgsA 1842701..1843243 (-) 543 WP_024704275.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DR994_RS09560 (DR994_09790) - 1843256..1844113 (-) 858 WP_011681760.1 helix-turn-helix domain-containing protein -
  DR994_RS09565 (DR994_09795) - 1844172..1845449 (-) 1278 WP_024704276.1 pitrilysin family protein -
  DR994_RS09570 (DR994_09800) - 1845451..1846701 (-) 1251 WP_024704277.1 pitrilysin family protein -
  DR994_RS09575 (DR994_09805) yaaA 1846780..1847157 (+) 378 WP_002947785.1 S4 domain-containing protein YaaA -
  DR994_RS09580 (DR994_09810) recF 1847160..1848260 (+) 1101 WP_096811730.1 DNA replication/repair protein RecF Machinery gene
  DR994_RS09585 (DR994_09815) guaB 1848429..1849910 (-) 1482 WP_173940694.1 IMP dehydrogenase -
  DR994_RS09590 (DR994_09820) trpS 1850087..1851109 (-) 1023 WP_002952292.1 tryptophan--tRNA ligase -
  DR994_RS09595 (DR994_09825) - 1851537..1852409 (+) 873 WP_096811733.1 YitT family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 42200.36 Da        Isoelectric Point: 9.2503

>NTDB_id=261838 DR994_RS09580 WP_096811730.1 1847160..1848260(+) (recF) [Streptococcus thermophilus strain CS9]
MWLKKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLRFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=261838 DR994_RS09580 WP_096811730.1 1847160..1848260(+) (recF) [Streptococcus thermophilus strain CS9]
ATGTGGCTTAAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAT
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGC
AATGCCTATCTCAAGTCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGGCTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCATAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAGATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTGATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65.642

97.814

0.642
  recF Bacillus subtilis subsp. subtilis str. 168

42.935

100

0.432