Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   DR994_RS06915 Genome accession   NZ_CP030927
Coordinates   1339777..1341270 (-) Length   497 a.a.
NCBI ID   WP_002946410.1    Uniprot ID   Q5M3H4
Organism   Streptococcus thermophilus strain CS9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1334777..1346270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR994_RS06885 (DR994_07065) - 1334907..1335284 (+) 378 WP_173940604.1 GntR family transcriptional regulator -
  DR994_RS06890 (DR994_07070) - 1335289..1335987 (+) 699 WP_173940605.1 ABC transporter ATP-binding protein -
  DR994_RS06895 (DR994_07075) - 1335999..1336784 (+) 786 WP_173940606.1 ABC transporter permease -
  DR994_RS06900 (DR994_07080) - 1336834..1337763 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein -
  DR994_RS06905 (DR994_07085) amiE 1337756..1338841 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  DR994_RS06910 (DR994_07090) amiD 1338851..1339777 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  DR994_RS06915 (DR994_07095) amiC 1339777..1341270 (-) 1494 WP_002946410.1 ABC transporter permease Regulator
  DR994_RS06920 (DR994_07100) - 1341332..1343298 (-) 1967 Protein_1331 peptide ABC transporter substrate-binding protein -
  DR994_RS06925 (DR994_07105) - 1343502..1343692 (-) 191 Protein_1332 IS3 family transposase -
  DR994_RS10355 (DR994_07110) - 1343683..1343853 (-) 171 WP_014608546.1 hypothetical protein -
  DR994_RS10360 (DR994_07115) - 1343866..1344102 (-) 237 WP_308123564.1 ABC transporter ATP-binding protein -
  DR994_RS06940 (DR994_07120) - 1344082..1344442 (-) 361 Protein_1335 TatD family hydrolase -
  DR994_RS06945 (DR994_07125) - 1344791..1345996 (+) 1206 WP_011227415.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55751.62 Da        Isoelectric Point: 10.0618

>NTDB_id=261805 DR994_RS06915 WP_002946410.1 1339777..1341270(-) (amiC) [Streptococcus thermophilus strain CS9]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTIFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=261805 DR994_RS06915 WP_002946410.1 1339777..1341270(-) (amiC) [Streptococcus thermophilus strain CS9]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCAAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACAATCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGCTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M3H4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMG 18311

100

100

1
  amiC Streptococcus thermophilus LMD-9

99.195

100

0.992
  amiC Streptococcus salivarius strain HSISS4

97.384

100

0.974