Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CYE04_RS09945 Genome accession   NZ_CP025466
Coordinates   1973085..1973681 (+) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain JS187     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1968085..1978681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYE04_RS09920 (CYE04_09910) - 1968277..1970034 (-) 1758 WP_002898401.1 Lon protease family protein -
  CYE04_RS09925 (CYE04_09915) matP 1970220..1970672 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  CYE04_RS09930 (CYE04_09920) ompA 1970804..1971874 (-) 1071 WP_002898408.1 porin OmpA -
  CYE04_RS09935 (CYE04_09925) sulA 1972227..1972736 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  CYE04_RS09945 (CYE04_09935) sxy/tfoX 1973085..1973681 (+) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  CYE04_RS09950 (CYE04_09940) yccS 1973695..1975830 (-) 2136 WP_002898422.1 YccS family putative transporter -
  CYE04_RS09955 (CYE04_09945) - 1975848..1976294 (-) 447 WP_002898425.1 YccF domain-containing protein -
  CYE04_RS09960 (CYE04_09950) helD 1976419..1978473 (+) 2055 WP_002898429.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=261786 CYE04_RS09945 WP_004150836.1 1973085..1973681(+) (sxy/tfoX) [Klebsiella pneumoniae strain JS187]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=261786 CYE04_RS09945 WP_004150836.1 1973085..1973681(+) (sxy/tfoX) [Klebsiella pneumoniae strain JS187]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment