Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DR994_RS04550 Genome accession   NZ_CP030927
Coordinates   884690..885286 (-) Length   198 a.a.
NCBI ID   WP_011225694.1    Uniprot ID   P96053
Organism   Streptococcus thermophilus strain CS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 879690..890286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR994_RS04515 (DR994_04660) coaE 880274..880867 (-) 594 WP_041827324.1 dephospho-CoA kinase -
  DR994_RS04520 (DR994_04665) mutM 880864..881685 (-) 822 WP_173940507.1 DNA-formamidopyrimidine glycosylase -
  DR994_RS04525 (DR994_04670) era 881733..882632 (-) 900 WP_002950226.1 GTPase Era -
  DR994_RS09920 (DR994_04675) - 882651..883055 (-) 405 WP_002946201.1 diacylglycerol kinase family protein -
  DR994_RS04530 (DR994_04680) ybeY 883036..883533 (-) 498 WP_002950224.1 rRNA maturation RNase YbeY -
  DR994_RS09925 - 883753..884549 (-) 797 Protein_863 PRD domain-containing protein -
  DR994_RS04550 (DR994_04700) recR 884690..885286 (-) 597 WP_011225694.1 recombination mediator RecR Machinery gene
  DR994_RS04555 (DR994_04705) pbp2b 885396..887510 (-) 2115 WP_087009778.1 penicillin-binding protein PBP2B -
  DR994_RS04560 (DR994_04710) - 887632..888468 (-) 837 WP_084829458.1 NAD(P)H-hydrate dehydratase -
  DR994_RS04565 (DR994_04715) - 888472..889326 (-) 855 WP_002946708.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  DR994_RS04570 (DR994_04720) - 889499..889690 (-) 192 WP_002950214.1 hypothetical protein -
  DR994_RS04575 (DR994_04725) - 889938..890150 (-) 213 WP_173940508.1 lysophospholipase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21767.98 Da        Isoelectric Point: 4.5326

>NTDB_id=261771 DR994_RS04550 WP_011225694.1 884690..885286(-) (recR) [Streptococcus thermophilus strain CS9]
MLYPTPIAKLIDSFSKLPGIGAKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCIICTDETRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVDEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=261771 DR994_RS04550 WP_011225694.1 884690..885286(-) (recR) [Streptococcus thermophilus strain CS9]
ATGCTTTATCCTACTCCAATTGCTAAACTGATTGATAGTTTTTCAAAACTTCCAGGAATTGGGGCTAAGACGGCGACACG
TCTGGCTTTCTATACCATTAGCATGTCTGATGAAGATGTCAATGATTTTGCAAAAAATCTTTTAGCAGCAAAACGTGAGT
TGACCTATTGTTCAGTTTGTGGTCGTTTGACTGATGATGACCCATGTATTATTTGTACGGATGAAACTAGAGACCGTACT
AAGATTTTGGTTGTTGAGGACTCCAAAGATGTTTCTGCTATGGAAAAGATTCAGGAATATCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATCTCCCCTATGAATGGTGTTGGACCAGATGATATTAATTTAAAAAGTTTGATTACCCGTCTTATGGATA
GCGAGGTTGACGAGGTCATCATCGCAACTAATGCAACGGCCGATGGTGAGGCAACCTCTATGTATATTTCACGGGTCCTC
AAACCTGCAGGTATTAAGGTGACCCGCCTAGCGCGTGGGCTGGCTGTTGGTTCTGACATCGAGTACGCTGATGAAGTAAC
CTTGCTAAGAGCCATCGAGAATCGAACAGAACTGTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P96053

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475