Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CPT07_RS13575 Genome accession   NZ_CP030919
Coordinates   2577799..2578536 (+) Length   245 a.a.
NCBI ID   WP_000197673.1    Uniprot ID   -
Organism   Escherichia coli strain KL53     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2572799..2583536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPT07_RS13560 (CPT07_13560) clpC 2573253..2575826 (-) 2574 WP_021553788.1 ATP-dependent chaperone ClpB Regulator
  CPT07_RS13565 (CPT07_13565) yfiH 2575956..2576687 (-) 732 WP_021553789.1 purine nucleoside phosphorylase YfiH -
  CPT07_RS13570 (CPT07_13570) rluD 2576684..2577664 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CPT07_RS13575 (CPT07_13575) comL 2577799..2578536 (+) 738 WP_000197673.1 outer membrane protein assembly factor BamD Machinery gene
  CPT07_RS13585 (CPT07_13585) raiA 2578807..2579148 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CPT07_RS13590 (CPT07_13590) pheL 2579252..2579299 (+) 48 WP_001700969.1 pheA operon leader peptide PheL -
  CPT07_RS13595 (CPT07_13595) pheA 2579398..2580558 (+) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  CPT07_RS13600 (CPT07_13600) tyrA 2580601..2581722 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CPT07_RS13605 (CPT07_13605) aroF 2581733..2582803 (-) 1071 WP_044864299.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CPT07_RS13610 (CPT07_13610) yfiL 2583013..2583378 (+) 366 WP_044864298.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27843.47 Da        Isoelectric Point: 7.1587

>NTDB_id=261689 CPT07_RS13575 WP_000197673.1 2577799..2578536(+) (comL) [Escherichia coli strain KL53]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPKSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=261689 CPT07_RS13575 WP_000197673.1 2577799..2578536(+) (comL) [Escherichia coli strain KL53]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAAAAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371