Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CXB49_RS11515 Genome accession   NZ_CP025429
Coordinates   2542788..2543582 (-) Length   264 a.a.
NCBI ID   WP_101708528.1    Uniprot ID   A0A2H5DWJ2
Organism   Chromobacterium sp. ATCC 53434     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2537788..2548582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB49_RS11505 (CXB49_11505) purL 2538258..2542217 (-) 3960 WP_101708526.1 phosphoribosylformylglycinamidine synthase -
  CXB49_RS11510 (CXB49_11510) - 2542364..2542702 (+) 339 WP_101708527.1 P-II family nitrogen regulator -
  CXB49_RS11515 (CXB49_11515) comL 2542788..2543582 (-) 795 WP_101708528.1 outer membrane protein assembly factor BamD Machinery gene
  CXB49_RS11520 (CXB49_11520) rluD 2543581..2544678 (+) 1098 WP_101708529.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CXB49_RS11525 (CXB49_11525) pgeF 2544668..2545405 (+) 738 WP_101708530.1 peptidoglycan editing factor PgeF -
  CXB49_RS11530 (CXB49_11530) - 2545520..2546422 (+) 903 WP_158300791.1 GNAT family N-acetyltransferase -
  CXB49_RS11535 (CXB49_11535) - 2546521..2547174 (+) 654 WP_101708532.1 HD domain-containing protein -
  CXB49_RS11540 (CXB49_11540) - 2547212..2547934 (+) 723 WP_101708533.1 metallophosphoesterase -
  CXB49_RS11545 (CXB49_11545) - 2547989..2548390 (+) 402 WP_158300792.1 hypothetical protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30461.57 Da        Isoelectric Point: 7.9795

>NTDB_id=261273 CXB49_RS11515 WP_101708528.1 2542788..2543582(-) (comL) [Chromobacterium sp. ATCC 53434]
MKRYVVAAMLVMAGLAGCASTEPYDETRGWPVEKLYAEAHDELNSGNYTRAVKLYETLESRFPYGRYAQQAQMDLAYTHY
KDGEPEQAIAAADRFIKLHPTHPNLDYIYYLKGLVYFNDDSGLLAKWAGQDMSERDPRAAREAFTAFRELTSRFPNSTYA
PDARAKMIKLVDALGGNEMHVARYYMKRGAYLAAANRVQGVVKDFSNTKYQEEALAILVTAYDKLQMPQLRDDARRVLAL
NYPQSQYLTTQWRTEEMPWWKLWK

Nucleotide


Download         Length: 795 bp        

>NTDB_id=261273 CXB49_RS11515 WP_101708528.1 2542788..2543582(-) (comL) [Chromobacterium sp. ATCC 53434]
ATGAAAAGATACGTTGTTGCTGCAATGTTGGTGATGGCGGGGCTTGCCGGATGTGCCTCCACGGAGCCCTACGACGAAAC
GCGCGGCTGGCCGGTGGAAAAGCTGTACGCGGAAGCTCACGACGAGTTGAACAGCGGCAATTATACCCGTGCTGTCAAGC
TCTATGAAACGCTGGAGTCCCGTTTTCCTTACGGCCGCTACGCGCAGCAGGCGCAGATGGACCTGGCCTACACCCATTAC
AAGGATGGGGAACCGGAGCAGGCCATCGCCGCGGCCGACCGTTTCATCAAGTTGCACCCGACGCACCCGAACCTCGACTA
CATCTATTATCTGAAGGGGCTGGTGTATTTCAACGACGATTCCGGTTTGCTGGCCAAATGGGCCGGTCAGGACATGAGCG
AGCGCGACCCGCGCGCCGCGCGCGAGGCGTTCACCGCCTTCCGCGAATTGACCAGCCGCTTCCCGAACAGCACCTACGCG
CCGGACGCGCGGGCCAAGATGATCAAGCTGGTCGACGCGCTGGGCGGCAACGAGATGCATGTGGCGCGCTACTACATGAA
GCGCGGCGCTTATCTGGCGGCGGCCAACCGCGTCCAGGGCGTGGTCAAGGATTTCTCCAACACCAAGTACCAGGAAGAGG
CGCTGGCCATCCTGGTGACCGCCTACGACAAGCTGCAGATGCCGCAACTGCGCGACGACGCCCGCCGCGTGCTGGCGTTG
AACTATCCGCAAAGCCAGTATCTGACGACGCAGTGGCGGACCGAGGAAATGCCCTGGTGGAAGCTGTGGAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(32-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H5DWJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

59.925

100

0.606
  comL Neisseria gonorrhoeae MS11

59.176

100

0.598

Multiple sequence alignment