Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CYG41_RS05760 | Genome accession | NZ_CP025428 |
| Coordinates | 1113100..1113585 (+) | Length | 161 a.a. |
| NCBI ID | WP_014569470.1 | Uniprot ID | - |
| Organism | Lacticaseibacillus rhamnosus strain LR-B1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1108100..1118585
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CYG41_RS05715 (CYG41_05715) | - | 1108337..1108585 (+) | 249 | WP_029943629.1 | hypothetical protein | - |
| CYG41_RS05720 (CYG41_05720) | - | 1108582..1108809 (-) | 228 | WP_014569461.1 | hypothetical protein | - |
| CYG41_RS15395 | - | 1108897..1109055 (+) | 159 | WP_014569462.1 | hypothetical protein | - |
| CYG41_RS05725 (CYG41_05725) | - | 1109121..1109669 (+) | 549 | WP_014569463.1 | hypothetical protein | - |
| CYG41_RS05730 (CYG41_05730) | - | 1109648..1109878 (+) | 231 | WP_015764912.1 | helix-turn-helix domain-containing protein | - |
| CYG41_RS15625 | - | 1109882..1110010 (+) | 129 | WP_014569465.1 | hypothetical protein | - |
| CYG41_RS05735 (CYG41_05735) | - | 1110022..1110249 (+) | 228 | WP_014569466.1 | hypothetical protein | - |
| CYG41_RS05740 (CYG41_05740) | - | 1110242..1110412 (+) | 171 | WP_015764913.1 | hypothetical protein | - |
| CYG41_RS05745 (CYG41_05745) | - | 1110456..1111331 (+) | 876 | WP_014569467.1 | recombinase RecT | - |
| CYG41_RS05750 (CYG41_05750) | - | 1111351..1112115 (+) | 765 | WP_014569468.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| CYG41_RS05755 (CYG41_05755) | - | 1112131..1113087 (+) | 957 | WP_014569469.1 | DnaD domain-containing protein | - |
| CYG41_RS05760 (CYG41_05760) | ssb | 1113100..1113585 (+) | 486 | WP_014569470.1 | single-stranded DNA-binding protein | Machinery gene |
| CYG41_RS05765 (CYG41_05765) | - | 1113603..1113818 (+) | 216 | WP_014569471.1 | helix-turn-helix domain-containing protein | - |
| CYG41_RS05770 (CYG41_05770) | - | 1113815..1114006 (+) | 192 | WP_015764330.1 | helix-turn-helix domain-containing protein | - |
| CYG41_RS05775 (CYG41_05775) | - | 1114376..1114825 (+) | 450 | WP_014569472.1 | hypothetical protein | - |
| CYG41_RS05780 (CYG41_05780) | - | 1114872..1115126 (+) | 255 | WP_014569473.1 | hypothetical protein | - |
| CYG41_RS05785 (CYG41_05785) | - | 1115123..1115524 (+) | 402 | WP_014569474.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CYG41_RS05790 (CYG41_05790) | - | 1115537..1116001 (+) | 465 | WP_014569475.1 | hypothetical protein | - |
| CYG41_RS05795 (CYG41_05795) | - | 1116013..1116198 (+) | 186 | WP_014569476.1 | hypothetical protein | - |
| CYG41_RS05800 (CYG41_05800) | - | 1116195..1116701 (+) | 507 | WP_014569477.1 | DUF1642 domain-containing protein | - |
| CYG41_RS05805 (CYG41_05805) | - | 1116691..1116870 (+) | 180 | WP_015764915.1 | hypothetical protein | - |
| CYG41_RS05810 (CYG41_05810) | - | 1116857..1117060 (+) | 204 | WP_029943632.1 | hypothetical protein | - |
| CYG41_RS05815 (CYG41_05815) | - | 1117050..1117481 (+) | 432 | WP_014569478.1 | hypothetical protein | - |
| CYG41_RS05820 (CYG41_05820) | - | 1117478..1117840 (+) | 363 | WP_015764916.1 | hypothetical protein | - |
| CYG41_RS05825 (CYG41_05825) | - | 1117837..1118076 (+) | 240 | WP_014569479.1 | hypothetical protein | - |
| CYG41_RS05830 (CYG41_05830) | - | 1118126..1118308 (+) | 183 | WP_029943634.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 161 a.a. Molecular weight: 17695.37 Da Isoelectric Point: 5.8947
>NTDB_id=261240 CYG41_RS05760 WP_014569470.1 1113100..1113585(+) (ssb) [Lacticaseibacillus rhamnosus strain LR-B1]
MLNSVSLTGRLTRDVDLRYTQSGTETGSFTLAVDRKFKSKNGERETDFVNCQIWRKSAENFANFTHKGALVGIEGRIQTR
TYDNAQGQKVFVTEVIVDNFALLESRQASQNNPKSQQTANASAAATTNASQTTPNASRANTTDPFANNGQPIDIQDDDLP
F
MLNSVSLTGRLTRDVDLRYTQSGTETGSFTLAVDRKFKSKNGERETDFVNCQIWRKSAENFANFTHKGALVGIEGRIQTR
TYDNAQGQKVFVTEVIVDNFALLESRQASQNNPKSQQTANASAAATTNASQTTPNASRANTTDPFANNGQPIDIQDDDLP
F
Nucleotide
Download Length: 486 bp
>NTDB_id=261240 CYG41_RS05760 WP_014569470.1 1113100..1113585(+) (ssb) [Lacticaseibacillus rhamnosus strain LR-B1]
TTGCTAAACAGTGTCTCACTAACAGGCCGGCTGACAAGAGATGTTGACTTGCGTTACACGCAAAGTGGCACGGAGACAGG
ATCATTCACGCTGGCCGTTGACCGCAAATTCAAGAGCAAAAACGGAGAACGGGAAACTGATTTCGTAAATTGCCAGATCT
GGCGCAAGTCGGCTGAGAACTTTGCAAATTTCACTCATAAGGGTGCACTTGTTGGCATCGAAGGCCGTATTCAAACGCGT
ACGTACGATAACGCGCAAGGACAGAAAGTGTTCGTGACCGAGGTAATCGTTGATAATTTTGCTTTGCTTGAGTCACGACA
GGCGTCTCAGAACAACCCTAAATCACAGCAAACAGCCAATGCATCAGCAGCAGCGACCACGAACGCGAGTCAAACGACTC
CAAATGCTTCACGAGCGAATACCACGGATCCGTTTGCTAATAATGGCCAGCCGATAGACATCCAAGATGATGATTTGCCA
TTCTGA
TTGCTAAACAGTGTCTCACTAACAGGCCGGCTGACAAGAGATGTTGACTTGCGTTACACGCAAAGTGGCACGGAGACAGG
ATCATTCACGCTGGCCGTTGACCGCAAATTCAAGAGCAAAAACGGAGAACGGGAAACTGATTTCGTAAATTGCCAGATCT
GGCGCAAGTCGGCTGAGAACTTTGCAAATTTCACTCATAAGGGTGCACTTGTTGGCATCGAAGGCCGTATTCAAACGCGT
ACGTACGATAACGCGCAAGGACAGAAAGTGTTCGTGACCGAGGTAATCGTTGATAATTTTGCTTTGCTTGAGTCACGACA
GGCGTCTCAGAACAACCCTAAATCACAGCAAACAGCCAATGCATCAGCAGCAGCGACCACGAACGCGAGTCAAACGACTC
CAAATGCTTCACGAGCGAATACCACGGATCCGTTTGCTAATAATGGCCAGCCGATAGACATCCAAGATGATGATTTGCCA
TTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.047 |
100 |
0.652 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.674 |
100 |
0.509 |