Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   DS746_RS02815 Genome accession   NZ_CP030888
Coordinates   522574..523233 (-) Length   219 a.a.
NCBI ID   WP_259831874.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CS19     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 517574..528233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS746_RS09420 - 518316..518480 (-) 165 Protein_537 helix-turn-helix domain-containing protein -
  DS746_RS02780 (DS746_0545) - 518471..518727 (-) 257 Protein_538 hypothetical protein -
  DS746_RS02785 (DS746_0546) - 518718..518987 (-) 270 WP_022552238.1 hypothetical protein -
  DS746_RS02790 (DS746_0547) - 519548..519820 (-) 273 WP_052799618.1 hypothetical protein -
  DS746_RS02795 (DS746_0548) - 520000..520770 (+) 771 WP_002871214.1 sel1 repeat family protein -
  DS746_RS02800 (DS746_0549) - 520810..521265 (-) 456 WP_052775415.1 hypothetical protein -
  DS746_RS02805 (DS746_0550) - 521252..521413 (-) 162 WP_257074572.1 hypothetical protein -
  DS746_RS02810 (DS746_0551) - 521395..522474 (-) 1080 WP_259831895.1 ATP-binding protein -
  DS746_RS02815 (DS746_0552) CJE0566 522574..523233 (-) 660 WP_259831874.1 DNA/RNA non-specific endonuclease Regulator
  DS746_RS02820 (DS746_0554) - 524024..524755 (-) 732 WP_002865053.1 S24 family peptidase -
  DS746_RS02825 (DS746_0555) - 524900..525115 (+) 216 WP_052799622.1 hypothetical protein -
  DS746_RS02830 (DS746_0556) - 525102..525536 (+) 435 WP_052799623.1 hypothetical protein -
  DS746_RS02835 (DS746_0557) - 525533..525910 (+) 378 WP_052847754.1 hypothetical protein -
  DS746_RS02840 (DS746_0558) - 525907..526908 (+) 1002 WP_259831897.1 hypothetical protein -
  DS746_RS02845 (DS746_0559) - 526919..527566 (+) 648 WP_259831899.1 hypothetical protein -
  DS746_RS02850 (DS746_0560) - 527584..527964 (+) 381 WP_048818583.1 crossover junction endodeoxyribonuclease RusA -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25810.36 Da        Isoelectric Point: 9.7732

>NTDB_id=261203 DS746_RS02815 WP_259831874.1 522574..523233(-) (CJE0566) [Campylobacter jejuni strain CS19]
MKKLILLPLLSTLALADYTQYKPSEDFAKYFTKQNCSQVLDKFYYLNCYDYNYKGTKAVAYRLEADNLKGEQIKKRPHFE
DDTNIPKKYRTTWSDYKNSGYDRGHTISNASMRKTTQAQRSTFLMSNITPQNPQINQRVWNKIEKRERQVALKLGEIEVL
NLVNYDNNPQRIRNQIAIPSSYTKILKGDNFKECYQVPNHEVEDESIRKYKVNCGKIHI

Nucleotide


Download         Length: 660 bp        

>NTDB_id=261203 DS746_RS02815 WP_259831874.1 522574..523233(-) (CJE0566) [Campylobacter jejuni strain CS19]
GTGAAAAAACTCATACTTTTACCATTGTTATCCACTCTAGCTTTAGCTGATTATACACAATACAAGCCAAGCGAAGATTT
TGCTAAGTATTTTACTAAACAAAACTGCTCACAAGTTTTAGATAAATTCTATTATCTAAATTGCTATGATTATAATTATA
AAGGCACTAAAGCCGTAGCTTATAGATTAGAAGCGGATAATTTAAAAGGTGAACAAATCAAAAAACGCCCACACTTTGAA
GATGATACAAATATACCTAAAAAATACCGCACTACATGGAGTGATTATAAAAACAGCGGTTATGATAGAGGGCATACTAT
TTCTAATGCTTCAATGAGAAAAACAACCCAAGCTCAAAGAAGCACTTTTTTAATGAGTAATATTACTCCGCAAAATCCAC
AGATCAATCAAAGGGTTTGGAACAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAGCTTGGAGAAATTGAAGTTTTA
AATTTGGTTAATTATGACAATAATCCACAAAGAATAAGAAATCAAATTGCTATTCCAAGCTCTTACACTAAGATTTTAAA
AGGTGATAATTTTAAAGAATGTTACCAAGTGCCAAATCATGAAGTAGAAGATGAGAGTATAAGAAAATATAAGGTTAATT
GTGGTAAAATTCATATTTAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(27-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

92.166

99.087

0.913
  CJE1441 Campylobacter jejuni RM1221

91.589

97.717

0.895