Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   CR921_RS05515 Genome accession   NZ_CP025399
Coordinates   1034921..1035733 (-) Length   270 a.a.
NCBI ID   WP_011681204.1    Uniprot ID   A0AAP2RND8
Organism   Streptococcus thermophilus strain GABA     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1029921..1040733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR921_RS05490 - 1030859..1031245 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  CR921_RS05495 - 1031337..1032215 (-) 879 Protein_1008 GNAT family N-acetyltransferase -
  CR921_RS05500 yidA 1032423..1033232 (+) 810 WP_011226081.1 sugar-phosphatase -
  CR921_RS05505 - 1033234..1034448 (+) 1215 WP_002953123.1 aminoacyltransferase -
  CR921_RS05510 - 1034500..1034861 (-) 362 Protein_1011 YbaN family protein -
  CR921_RS05515 vicX 1034921..1035733 (-) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  CR921_RS05520 vicK 1035739..1037079 (-) 1341 WP_101415634.1 cell wall metabolism sensor histidine kinase VicK Regulator
  CR921_RS05525 vicR 1037072..1037779 (-) 708 WP_101415635.1 response regulator YycF Regulator
  CR921_RS05530 - 1038304..1039071 (+) 768 WP_011681207.1 amino acid ABC transporter ATP-binding protein -
  CR921_RS05535 - 1039083..1039916 (+) 834 WP_011681208.1 transporter substrate-binding domain-containing protein -
  CR921_RS05540 - 1039934..1040632 (+) 699 WP_011681209.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30045.01 Da        Isoelectric Point: 5.5779

>NTDB_id=260932 CR921_RS05515 WP_011681204.1 1034921..1035733(-) (vicX) [Streptococcus thermophilus strain GABA]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=260932 CR921_RS05515 WP_011681204.1 1034921..1035733(-) (vicX) [Streptococcus thermophilus strain GABA]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCTAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774

Multiple sequence alignment