Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CYD28_RS04355 | Genome accession | NZ_CP025396 |
| Coordinates | 909696..910094 (+) | Length | 132 a.a. |
| NCBI ID | WP_011275249.1 | Uniprot ID | A0A5B2YX53 |
| Organism | Staphylococcus haemolyticus strain B | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 904696..915094
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CYD28_RS04325 (CYD28_04325) | atpD | 904843..906255 (+) | 1413 | WP_011275243.1 | F0F1 ATP synthase subunit beta | - |
| CYD28_RS04330 (CYD28_04330) | - | 906276..906677 (+) | 402 | WP_011275244.1 | F0F1 ATP synthase subunit epsilon | - |
| CYD28_RS04335 (CYD28_04335) | - | 906805..907038 (+) | 234 | WP_011275245.1 | DUF1146 family protein | - |
| CYD28_RS04340 (CYD28_04340) | murA | 907143..908408 (+) | 1266 | WP_033079610.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| CYD28_RS04345 (CYD28_04345) | fabZ | 908448..908885 (+) | 438 | WP_011275247.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| CYD28_RS04350 (CYD28_04350) | - | 909065..909508 (-) | 444 | WP_011275248.1 | YwpF-like family protein | - |
| CYD28_RS04355 (CYD28_04355) | ssb | 909696..910094 (+) | 399 | WP_011275249.1 | single-stranded DNA-binding protein | Machinery gene |
| CYD28_RS04360 (CYD28_04360) | - | 910433..911140 (+) | 708 | WP_011275250.1 | transglycosylase family protein | - |
| CYD28_RS04365 (CYD28_04365) | tenA | 911429..912118 (+) | 690 | WP_037571335.1 | thiaminase II | - |
| CYD28_RS04370 (CYD28_04370) | thiD | 912111..912932 (+) | 822 | WP_037571333.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| CYD28_RS04375 (CYD28_04375) | thiM | 912925..913716 (+) | 792 | WP_103416030.1 | hydroxyethylthiazole kinase | - |
| CYD28_RS04380 (CYD28_04380) | thiE | 913718..914356 (+) | 639 | WP_037571326.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 132 a.a. Molecular weight: 15141.05 Da Isoelectric Point: 4.7942
>NTDB_id=260876 CYD28_RS04355 WP_011275249.1 909696..910094(+) (ssb) [Staphylococcus haemolyticus strain B]
MLNKIVIVGRLTKKAQIFENEEVKIATFCVATERNYKDENNEIACDYIFCKAFGKTATNIESYTDQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSKNDNILPNTSYDEDAYSFDHLEVIDVN
MLNKIVIVGRLTKKAQIFENEEVKIATFCVATERNYKDENNEIACDYIFCKAFGKTATNIESYTDQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSKNDNILPNTSYDEDAYSFDHLEVIDVN
Nucleotide
Download Length: 399 bp
>NTDB_id=260876 CYD28_RS04355 WP_011275249.1 909696..910094(+) (ssb) [Staphylococcus haemolyticus strain B]
ATGCTAAATAAAATTGTGATAGTAGGTCGATTGACCAAAAAGGCACAAATATTTGAAAACGAGGAGGTGAAAATAGCTAC
GTTCTGTGTTGCAACTGAACGTAATTATAAAGATGAAAATAATGAAATAGCTTGTGATTATATTTTTTGTAAGGCATTTG
GTAAAACAGCAACAAATATAGAATCATATACAGACCAAGGCACTTTAGTTGGTATTACAGGACAAATGAGATCTCGTAAG
TACGATAAAGATGGCCAAACGCACTTTGTGACTGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATCTAAAAA
TGATAATATTCTTCCTAACACCTCATATGATGAAGACGCTTATTCCTTTGATCACCTTGAAGTGATTGATGTTAACTAA
ATGCTAAATAAAATTGTGATAGTAGGTCGATTGACCAAAAAGGCACAAATATTTGAAAACGAGGAGGTGAAAATAGCTAC
GTTCTGTGTTGCAACTGAACGTAATTATAAAGATGAAAATAATGAAATAGCTTGTGATTATATTTTTTGTAAGGCATTTG
GTAAAACAGCAACAAATATAGAATCATATACAGACCAAGGCACTTTAGTTGGTATTACAGGACAAATGAGATCTCGTAAG
TACGATAAAGATGGCCAAACGCACTTTGTGACTGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATCTAAAAA
TGATAATATTCTTCCTAACACCTCATATGATGAAGACGCTTATTCCTTTGATCACCTTGAAGTGATTGATGTTAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
75.573 |
99.242 |
0.75 |
| ssb | Staphylococcus aureus MW2 |
74.809 |
99.242 |
0.742 |