Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   APECO1_RS14710 Genome accession   NC_008563
Coordinates   2895371..2896108 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli APEC O1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2890371..2901108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APECO1_RS14695 (APECO1_3938) clpC 2890825..2893398 (-) 2574 WP_001350770.1 ATP-dependent chaperone ClpB Regulator
  APECO1_RS14700 (APECO1_3937) yfiH 2893528..2894259 (-) 732 WP_000040118.1 purine nucleoside phosphorylase YfiH -
  APECO1_RS14705 (APECO1_3936) rluD 2894256..2895236 (-) 981 WP_000079096.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  APECO1_RS14710 (APECO1_3935) comL 2895371..2896108 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  APECO1_RS14720 raiA 2896378..2896719 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  APECO1_RS31215 pheL 2896823..2896870 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  APECO1_RS14725 (APECO1_3934) pheA 2896969..2898129 (+) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  APECO1_RS14730 (APECO1_3933) tyrA 2898172..2899293 (-) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  APECO1_RS14735 (APECO1_3932) aroF 2899304..2900374 (-) 1071 WP_001168025.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  APECO1_RS14740 (APECO1_3931) yfiL 2900584..2900949 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=26083 APECO1_RS14710 WP_000197686.1 2895371..2896108(+) (comL) [Escherichia coli APEC O1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=26083 APECO1_RS14710 WP_000197686.1 2895371..2896108(+) (comL) [Escherichia coli APEC O1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment