Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HAC_RS07200 Genome accession   NC_008229
Coordinates   1474455..1474736 (-) Length   93 a.a.
NCBI ID   WP_011578478.1    Uniprot ID   -
Organism   Helicobacter acinonychis str. Sheeba     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1469455..1479736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAC_RS07185 (Hac_1690) - 1470206..1471639 (-) 1434 WP_011578475.1 COG3014 family protein -
  HAC_RS07190 (Hac_1691) comB4 1471827..1474190 (-) 2364 WP_011578476.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HAC_RS07195 (Hac_1692) comB3 1474192..1474455 (-) 264 WP_011578477.1 hypothetical protein Machinery gene
  HAC_RS07200 (Hac_1693) comB2 1474455..1474736 (-) 282 WP_011578478.1 TrbC/VirB2 family protein Machinery gene
  HAC_RS07205 (Hac_1694) - 1474869..1475696 (-) 828 WP_011578479.1 DUF5718 family protein -
  HAC_RS07210 (Hac_1695) - 1475787..1476839 (-) 1053 WP_011578480.1 MnmA/TRMU family protein -
  HAC_RS07215 (Hac_1696) dnaG 1476836..1478515 (-) 1680 WP_011578481.1 DNA primase -
  HAC_RS07220 (Hac_1697) groES 1478795..1479151 (+) 357 WP_011578482.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10553.84 Da        Isoelectric Point: 9.1450

>NTDB_id=26077 HAC_RS07200 WP_011578478.1 1474455..1474736(-) (comB2) [Helicobacter acinonychis str. Sheeba]
MSAHFLKIIFLIGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=26077 HAC_RS07200 WP_011578478.1 1474455..1474736(-) (comB2) [Helicobacter acinonychis str. Sheeba]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAATAGGCATGTGTGTTTCAAGCTTGTTCGCTGAAGGCTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCTATTGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTCTATTCTTT
AAAGCCCCTAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978

Multiple sequence alignment