Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HAC_RS07195 | Genome accession | NC_008229 |
| Coordinates | 1474192..1474455 (-) | Length | 87 a.a. |
| NCBI ID | WP_011578477.1 | Uniprot ID | Q17VD2 |
| Organism | Helicobacter acinonychis str. Sheeba | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1469192..1479455
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HAC_RS07185 (Hac_1690) | - | 1470206..1471639 (-) | 1434 | WP_011578475.1 | COG3014 family protein | - |
| HAC_RS07190 (Hac_1691) | comB4 | 1471827..1474190 (-) | 2364 | WP_011578476.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| HAC_RS07195 (Hac_1692) | comB3 | 1474192..1474455 (-) | 264 | WP_011578477.1 | hypothetical protein | Machinery gene |
| HAC_RS07200 (Hac_1693) | comB2 | 1474455..1474736 (-) | 282 | WP_011578478.1 | TrbC/VirB2 family protein | Machinery gene |
| HAC_RS07205 (Hac_1694) | - | 1474869..1475696 (-) | 828 | WP_011578479.1 | DUF5718 family protein | - |
| HAC_RS07210 (Hac_1695) | - | 1475787..1476839 (-) | 1053 | WP_011578480.1 | MnmA/TRMU family protein | - |
| HAC_RS07215 (Hac_1696) | dnaG | 1476836..1478515 (-) | 1680 | WP_011578481.1 | DNA primase | - |
| HAC_RS07220 (Hac_1697) | groES | 1478795..1479151 (+) | 357 | WP_011578482.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10074.14 Da Isoelectric Point: 9.8829
>NTDB_id=26076 HAC_RS07195 WP_011578477.1 1474192..1474455(-) (comB3) [Helicobacter acinonychis str. Sheeba]
MIILSASVKNLREISVKEKFLWLNAKSYLISIFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSRIKT
KTKSYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISIFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSRIKT
KTKSYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=26076 HAC_RS07195 WP_011578477.1 1474192..1474455(-) (comB3) [Helicobacter acinonychis str. Sheeba]
ATGATTATTTTATCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTCAAAGAAAAATTTTTGTGGCTGAACGCTAAATC
TTATTTGATTTCTATTTTTGTGCCTTTTATCTTGCTTCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTGGGGT
TTTTAGCGCTCTTTAGCGTGCTAGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAAAAGCAGAATAAAAACT
AAAACCAAAAGTTATAGAGCATAG
ATGATTATTTTATCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTCAAAGAAAAATTTTTGTGGCTGAACGCTAAATC
TTATTTGATTTCTATTTTTGTGCCTTTTATCTTGCTTCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTGGGGT
TTTTAGCGCTCTTTAGCGTGCTAGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAAAAGCAGAATAAAAACT
AAAACCAAAAGTTATAGAGCATAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
94.253 |
100 |
0.943 |