Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HAC_RS04230 Genome accession   NC_008229
Coordinates   863758..864162 (-) Length   134 a.a.
NCBI ID   WP_011577867.1    Uniprot ID   -
Organism   Helicobacter acinonychis str. Sheeba     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 858758..869162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAC_RS04195 (Hac_0976) - 858811..860022 (-) 1212 WP_011577859.1 hypothetical protein -
  HAC_RS04200 (Hac_0977) - 860019..860798 (-) 780 WP_041600281.1 hypothetical protein -
  HAC_RS04205 - 860782..861185 (-) 404 Protein_822 DUF1294 domain-containing protein -
  HAC_RS08935 - 861436..861856 (-) 421 Protein_823 lysozyme -
  HAC_RS04215 (Hac_0982) - 861877..862437 (-) 561 WP_041600200.1 hypothetical protein -
  HAC_RS04220 (Hac_0983) - 862421..862759 (-) 339 WP_011577865.1 hypothetical protein -
  HAC_RS04225 (Hac_0984) - 862876..863433 (-) 558 WP_041600282.1 cysteine-rich Sel1 repeat protein -
  HAC_RS04230 (Hac_0986) dprB 863758..864162 (-) 405 WP_011577867.1 Holliday junction resolvase RuvX Machinery gene
  HAC_RS04235 (Hac_0987) dprA 864159..864959 (-) 801 WP_011577868.1 DNA-processing protein DprA Machinery gene
  HAC_RS04240 (Hac_0988) minE 864966..865199 (-) 234 WP_000051430.1 cell division topological specificity factor MinE -
  HAC_RS04245 (Hac_0989) minD 865196..866002 (-) 807 WP_011577869.1 septum site-determining protein MinD -
  HAC_RS04250 (Hac_0990) ilvC 866025..867017 (-) 993 WP_011577870.1 ketol-acid reductoisomerase -
  HAC_RS04260 (Hac_0991) - 867273..868055 (+) 783 WP_011577871.1 NAD+ synthase -
  HAC_RS04265 (Hac_0992) - 868052..868990 (+) 939 WP_011577872.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15188.75 Da        Isoelectric Point: 8.6937

>NTDB_id=26073 HAC_RS04230 WP_011577867.1 863758..864162(-) (dprB) [Helicobacter acinonychis str. Sheeba]
MILACDVGLKRIGIAMLLNGIILPLEAILRQNRNQASRDLSDLLKEKNIQVLVVGKPSENYADTNIRIGHFIKLVDFKGE
IVFINEDSSSIEAYENLEYLGRKNKWLAIKDGRLDSLSACRILERYCQQVLKKG

Nucleotide


Download         Length: 405 bp        

>NTDB_id=26073 HAC_RS04230 WP_011577867.1 863758..864162(-) (dprB) [Helicobacter acinonychis str. Sheeba]
ATGATTTTAGCATGCGATGTGGGGCTAAAACGCATTGGCATAGCCATGCTTTTAAATGGCATTATCTTACCTTTAGAAGC
GATTTTACGCCAAAATAGGAATCAGGCTTCTAGGGATTTGAGCGATTTATTGAAAGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCTAGTGAAAATTATGCGGATACGAATATTCGCATTGGGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGATAGCTCTAGCATAGAAGCTTATGAGAATTTAGAGTATTTGGGCAGGAAAAATAAGTGGCT
CGCTATTAAAGACGGCCGTTTGGACTCTTTGAGCGCTTGCAGGATTTTAGAGCGCTATTGCCAGCAAGTTTTAAAAAAGG
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

90.152

98.507

0.888

Multiple sequence alignment