Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   APECO1_RS11135 Genome accession   NC_008563
Coordinates   2165090..2165566 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli APEC O1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2160090..2170566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APECO1_RS11105 (APECO1_1095) - 2160267..2161172 (+) 906 WP_000203541.1 diguanylate cyclase regulator RdcB family protein -
  APECO1_RS11110 (APECO1_1097) - 2161169..2162239 (+) 1071 WP_000102660.1 patatin-like phospholipase family protein -
  APECO1_RS11115 (APECO1_1098) - 2162375..2163058 (+) 684 WP_001361977.1 hypothetical protein -
  APECO1_RS11120 (APECO1_1099) - 2163074..2163484 (+) 411 WP_000846713.1 hypothetical protein -
  APECO1_RS11125 - 2163695..2164513 (+) 819 WP_001234379.1 DUF932 domain-containing protein -
  APECO1_RS11130 - 2164595..2165074 (+) 480 WP_000860074.1 antirestriction protein -
  APECO1_RS11135 radC 2165090..2165566 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  APECO1_RS11140 yeeT 2165629..2165850 (+) 222 WP_000692312.1 DUF987 domain-containing protein -
  APECO1_RS11145 (APECO1_1102) cbeA 2165924..2166292 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  APECO1_RS11150 (APECO1_1103) cbtA 2166381..2166754 (+) 374 Protein_2140 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  APECO1_RS11155 yeeW 2166751..2166945 (+) 195 WP_000988600.1 DUF5983 family protein -
  APECO1_RS31120 - 2166991..2167071 (+) 81 Protein_2142 hypothetical protein -
  APECO1_RS28805 - 2167360..2167506 (-) 147 Protein_2143 transposase domain-containing protein -
  APECO1_RS28810 - 2167560..2167742 (+) 183 WP_001016349.1 EutP/PduV family microcompartment system protein -
  APECO1_RS11170 (APECO1_1105) tmaR 2167843..2168172 (-) 330 WP_000450409.1 DUF496 family protein -
  APECO1_RS11175 (APECO1_1106) yeeA 2168344..2169402 (-) 1059 WP_001200892.1 FUSC family protein -
  APECO1_RS11180 (APECO1_1107) sbmC 2169600..2170073 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=26073 APECO1_RS11135 WP_001186773.1 2165090..2165566(+) (radC) [Escherichia coli APEC O1]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=26073 APECO1_RS11135 WP_001186773.1 2165090..2165566(+) (radC) [Escherichia coli APEC O1]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment