Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   HAC_RS00010 Genome accession   NC_008229
Coordinates   1575..3011 (+) Length   478 a.a.
NCBI ID   WP_011576993.1    Uniprot ID   Q17ZQ5
Organism   Helicobacter acinonychis str. Sheeba     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAC_RS00005 (Hac_0001) dnaA 1..1350 (+) 1350 WP_011576992.1 chromosomal replication initiator protein DnaA -
  HAC_RS00010 (Hac_0002) comH 1575..3011 (+) 1437 WP_011576993.1 hypothetical protein Machinery gene
  HAC_RS00020 (Hac_0003) - 3162..3914 (+) 753 WP_011576994.1 exodeoxyribonuclease III -
  HAC_RS00025 (Hac_0004) - 3911..4546 (-) 636 WP_011576995.1 outer membrane protein -
  HAC_RS00030 (Hac_0005) - 4550..4903 (-) 354 WP_011576996.1 hypothetical protein -
  HAC_RS00035 (Hac_0006) recG 5021..6886 (+) 1866 WP_011576997.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 54671.52 Da        Isoelectric Point: 8.1112

>NTDB_id=26060 HAC_RS00010 WP_011576993.1 1575..3011(+) (comH) [Helicobacter acinonychis str. Sheeba]
MKKILCLFLLFLIPLQAFVIELLEEIKISPSKGTFKARIIDSNEPKQVLGTYKISPHQKLTLTITHIAKENSYQPLNDKP
SLETNLNPNRSIIPKNTQIVFSSRELKDPYSNQTTSLNLPKQKPQNKPSSSQQSQKFSYLDYPNKLNSKASKNNLLAPLS
LPKTKSEAKTGDTTSENSSSNQGGGIFMVPQTEKTLSNDKTPNADTNESNENNENNENNNNENSGEKQAIRDPNIKEFAC
GKWVYDDENLQAYRPSILKRINEDKQTTTDITPCDYSTAENKSGKIITPYTKISVHKTEPIEEPQTFEAKNNFTILQAKS
TTEKCKRARMRKDGTIRQCYLIEEPLKQAWNSQYEITSQLVKATYERPKQDDQIEPTFYETNELSYSSTRKSEVTQDELK
LDKKFMEFVEVYEGHYLNDAIKESSEYKEWVKNHVRLKEGVCMALEIEEKPRAKSTPLSVENSEVVCVKKGNYLFNRV

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=26060 HAC_RS00010 WP_011576993.1 1575..3011(+) (comH) [Helicobacter acinonychis str. Sheeba]
ATGAAAAAAATCCTTTGTCTTTTCTTGCTTTTTTTAATCCCCCTTCAAGCTTTTGTCATCGAACTTTTAGAAGAAATCAA
AATCTCACCATCTAAAGGCACTTTTAAGGCTAGAATCATAGATTCTAACGAACCAAAACAGGTTTTAGGGACTTACAAAA
TCTCACCACACCAAAAACTCACGCTCACTATCACCCATATCGCTAAAGAAAATTCTTATCAACCTCTCAATGATAAACCT
TCTTTAGAAACGAACTTAAACCCCAATCGCTCTATTATCCCTAAAAACACGCAAATTGTCTTTTCTTCAAGAGAATTAAA
AGACCCCTACTCCAACCAAACCACTTCTTTAAATTTGCCGAAACAAAAACCACAAAACAAACCCAGTTCATCGCAACAAT
CTCAAAAATTTTCCTATTTGGATTACCCTAACAAACTCAATTCTAAAGCTTCTAAAAATAACCTTTTAGCGCCTTTAAGT
CTCCCTAAAACAAAAAGCGAAGCCAAAACAGGCGACACGACTTCTGAAAACTCTTCATCCAATCAAGGAGGTGGGATTTT
TATGGTGCCTCAAACTGAAAAAACCCTCTCTAACGATAAAACCCCTAACGCTGACACAAATGAAAGTAATGAAAACAACG
AAAATAATGAGAACAATAATAATGAAAATAGTGGGGAAAAACAAGCCATTAGAGATCCTAATATCAAGGAATTTGCGTGC
GGAAAGTGGGTTTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTAATGAAGACAAACAAAC
CACCACAGACATTACCCCTTGCGATTACAGCACGGCTGAAAATAAAAGCGGTAAAATCATCACCCCTTATACCAAAATCT
CTGTTCATAAAACAGAGCCCATAGAAGAGCCCCAAACTTTTGAAGCTAAAAACAATTTCACGATTCTTCAAGCTAAAAGC
ACCACAGAAAAATGCAAAAGGGCTAGAATGCGAAAAGACGGCACTATTAGGCAATGCTATTTGATAGAAGAGCCTTTAAA
ACAAGCATGGAATAGCCAATATGAAATCACTTCTCAGTTAGTGAAAGCTACTTATGAACGCCCTAAACAAGATGATCAAA
TAGAGCCAACTTTTTATGAAACCAATGAATTGTCTTATTCTTCTACGCGAAAAAGTGAAGTCACACAAGATGAATTGAAA
TTGGATAAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATGCAATCAAAGAAAGCAGTGAATA
CAAAGAATGGGTTAAAAACCATGTGCGTTTGAAAGAAGGGGTGTGCATGGCGTTAGAGATAGAAGAAAAACCGCGAGCTA
AAAGCACGCCTTTGAGCGTTGAAAATTCTGAAGTTGTTTGTGTGAAAAAAGGGAACTATTTATTCAATAGGGTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q17ZQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

73.77

100

0.753

Multiple sequence alignment