Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DSB67_RS11010 Genome accession   NZ_CP030788
Coordinates   2283143..2283742 (-) Length   199 a.a.
NCBI ID   WP_005432989.1    Uniprot ID   A0AAQ2XYN5
Organism   Vibrio campbellii strain DS40M4     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2278143..2288742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB67_RS10985 (DSB67_10990) - 2278234..2278890 (-) 657 WP_010643987.1 helix-turn-helix transcriptional regulator -
  DSB67_RS10990 (DSB67_10995) - 2278919..2280196 (-) 1278 WP_010643985.1 serine dehydratase subunit alpha family protein -
  DSB67_RS10995 (DSB67_11000) - 2280211..2280591 (-) 381 WP_010643983.1 RidA family protein -
  DSB67_RS11000 (DSB67_11005) - 2280906..2282165 (+) 1260 WP_010643981.1 amino acid permease -
  DSB67_RS11005 (DSB67_11010) aqpZ 2282391..2283089 (+) 699 WP_010643980.1 aquaporin Z -
  DSB67_RS11010 (DSB67_11015) recR 2283143..2283742 (-) 600 WP_005432989.1 recombination mediator RecR Machinery gene
  DSB67_RS11015 (DSB67_11020) - 2283773..2284102 (-) 330 WP_005432961.1 YbaB/EbfC family nucleoid-associated protein -
  DSB67_RS11020 (DSB67_11025) dnaX 2284185..2286383 (-) 2199 WP_010643975.1 DNA polymerase III subunit gamma/tau -
  DSB67_RS11025 (DSB67_11030) apt 2286392..2286937 (-) 546 WP_005432901.1 adenine phosphoribosyltransferase -
  DSB67_RS11030 (DSB67_11035) - 2287104..2287451 (-) 348 WP_050545969.1 YbaN family protein -
  DSB67_RS26125 (DSB67_11040) - 2287524..2287655 (-) 132 WP_005432936.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21711.75 Da        Isoelectric Point: 5.7468

>NTDB_id=260559 DSB67_RS11010 WP_005432989.1 2283143..2283742(-) (recR) [Vibrio campbellii strain DS40M4]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQAMTEIGHCTECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CKEHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=260559 DSB67_RS11010 WP_005432989.1 2283143..2283742(-) (recR) [Vibrio campbellii strain DS40M4]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTTGGCCCCAAGTCGGCGCAGCG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGCCAAGCAATGACAGAAA
TTGGCCATTGCACCGAGTGTCGTACTTTCACTGAAGAAGAAGTTTGTCATATTTGTACTAACCCAAAACGCCAAGAAAAT
GGTCAGATTTGTGTGGTAGAAAGTCCGGCAGACATCGCAGCAGTAGAAGCAACGGGTCAATACTCGGGTCGATACTTTGT
ACTGATGGGACATTTATCGCCGCTGGACGGAATTGGTCCAAGTGATATTGGTCTAGATGTATTGGATTACCGTCTGCGCC
GCGGAGATATCTCTGAGGTGATTCTCGCTACCAACCCAACGGTAGAAGGGGAAGCGACGGCTCATTACATCGCAGAACTT
TGTAAAGAACACCAAGTGGAAGCAAGTCGCATTGCACACGGTGTACCAGTAGGTGGCGAGCTTGAGCTCGTGGACGGGAC
AACCTTGTCACACTCCCTTCTGGGTCGACACAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAQ2XYN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

100

0.452
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

100

0.442
  recR Streptococcus pneumoniae R6

37.306

96.985

0.362

Multiple sequence alignment