Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C9F11_RS27940 Genome accession   NZ_CP030771
Coordinates   6466042..6466689 (-) Length   215 a.a.
NCBI ID   WP_138961840.1    Uniprot ID   -
Organism   Streptomyces sp. YIM 121038     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6461042..6471689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9F11_RS27930 (C9F11_27805) - 6461492..6463837 (+) 2346 WP_249401911.1 MMPL family transporter -
  C9F11_RS27935 (C9F11_27810) - 6463970..6465829 (-) 1860 WP_138961839.1 glycoside hydrolase family 18 chitinase -
  C9F11_RS27940 (C9F11_27815) vraR 6466042..6466689 (-) 648 WP_138961840.1 response regulator transcription factor Regulator
  C9F11_RS27945 (C9F11_27820) - 6466686..6467885 (-) 1200 WP_138961841.1 histidine kinase -
  C9F11_RS27950 (C9F11_27825) - 6468056..6468703 (+) 648 WP_138961842.1 hypothetical protein -
  C9F11_RS27955 (C9F11_27830) - 6468700..6469272 (-) 573 WP_138961843.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  C9F11_RS27960 (C9F11_27835) - 6469311..6470060 (-) 750 WP_138961844.1 ABC transporter permease -
  C9F11_RS27965 (C9F11_27840) - 6470116..6470898 (-) 783 WP_138961845.1 ATP-binding cassette domain-containing protein -
  C9F11_RS27970 (C9F11_27845) - 6470983..6471618 (+) 636 WP_138961846.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23037.68 Da        Isoelectric Point: 4.9777

>NTDB_id=260491 C9F11_RS27940 WP_138961840.1 6466042..6466689(-) (vraR) [Streptomyces sp. YIM 121038]
MIRVLVAEDQSAVRAGLVLILRSAPDIEVVGEAADGEQAVALARELRPDLVLMDVQMPRLDGVSATRQVVAEQLADVLVL
TTFDLDEYVFGALRAGASGFLLKNTEARALLDAVRTVARGEGLIAPAVTRRLIAEFAAPRPVRSANAPDPAVLDALTRRE
REVLSCLGEGMSNAEIARRLDMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGV

Nucleotide


Download         Length: 648 bp        

>NTDB_id=260491 C9F11_RS27940 WP_138961840.1 6466042..6466689(-) (vraR) [Streptomyces sp. YIM 121038]
ATGATCCGTGTCCTCGTCGCCGAGGACCAGTCCGCCGTGCGGGCGGGCCTCGTCCTGATCCTGCGCAGCGCGCCCGACAT
CGAGGTCGTCGGCGAGGCCGCGGACGGCGAGCAGGCCGTGGCGCTCGCCCGCGAGCTGCGGCCCGACCTCGTCCTGATGG
ACGTGCAGATGCCACGCCTGGACGGCGTGTCAGCCACGCGTCAGGTGGTCGCCGAGCAGCTGGCCGACGTGCTCGTCCTG
ACGACGTTCGACCTGGACGAGTACGTCTTCGGGGCGCTGCGCGCGGGGGCGTCGGGCTTCCTGCTGAAGAACACGGAGGC
CAGGGCGCTGCTCGACGCGGTGCGCACGGTGGCGCGCGGCGAGGGCCTGATCGCGCCCGCCGTCACCCGCCGGCTGATCG
CCGAGTTCGCGGCGCCCCGCCCGGTGCGCTCCGCGAACGCGCCCGACCCGGCGGTCCTCGACGCCCTGACGCGGCGCGAG
CGCGAGGTCCTGTCCTGCCTGGGCGAGGGCATGTCCAACGCGGAGATCGCCCGCCGCCTCGACATGGCGGAGGCCACGGT
GAAGACGCATGTGAGCCGCCTGCTCGGCAAGCTGGAGCTGCGCAGCCGGGTGCAGGCGGCCGTGCTCGCCCAGGAGCTGG
GAGTCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-210)

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.706

98.14

0.409
  degU Bacillus subtilis subsp. subtilis str. 168

37.557

100

0.386

Multiple sequence alignment