Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C9F11_RS25260 Genome accession   NZ_CP030771
Coordinates   5884856..5885548 (+) Length   230 a.a.
NCBI ID   WP_138961391.1    Uniprot ID   -
Organism   Streptomyces sp. YIM 121038     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5879856..5890548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9F11_RS25240 (C9F11_25145) - 5880973..5881605 (-) 633 WP_138961387.1 RDD family protein -
  C9F11_RS25245 (C9F11_25150) - 5881854..5882711 (+) 858 WP_138961388.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  C9F11_RS25250 (C9F11_25155) - 5882728..5883243 (+) 516 WP_138961389.1 DUF3017 domain-containing protein -
  C9F11_RS25255 (C9F11_25160) - 5883699..5884859 (+) 1161 WP_138961390.1 sensor histidine kinase -
  C9F11_RS25260 (C9F11_25165) vraR 5884856..5885548 (+) 693 WP_138961391.1 response regulator transcription factor Regulator
  C9F11_RS25265 (C9F11_25170) - 5885617..5886009 (-) 393 WP_138961392.1 hypothetical protein -
  C9F11_RS25270 (C9F11_25175) - 5886306..5887112 (+) 807 WP_138961393.1 peptidoglycan-binding protein -
  C9F11_RS48175 (C9F11_25180) - 5887109..5888023 (+) 915 WP_212767828.1 XRE family transcriptional regulator -
  C9F11_RS25285 (C9F11_25185) - 5888919..5889479 (-) 561 WP_249401882.1 hypothetical protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 24113.66 Da        Isoelectric Point: 4.5229

>NTDB_id=260482 C9F11_RS25260 WP_138961391.1 5884856..5885548(+) (vraR) [Streptomyces sp. YIM 121038]
MTPHIRVLVVDDQFLIRAGLVGVLRAASGIEVVGEAGDGAEAVELAAATRPDVILMDIRMPGMNGITATERILAAAPDPA
PRVLVLTTFDLDEYVYGALRAGASGFLLKDSGPERLLAAVAAVGSGDALFAPSVTRRLVEAFASRPGSTPLVGAESPPGL
ESLTGRELEVLRLIARGLSNADIADRLYISEATVKTHLNRTMNKLDIDSRAQAVVMAYESGLVTPGDQDL

Nucleotide


Download         Length: 693 bp        

>NTDB_id=260482 C9F11_RS25260 WP_138961391.1 5884856..5885548(+) (vraR) [Streptomyces sp. YIM 121038]
ATGACCCCACACATCAGGGTGCTTGTCGTGGACGACCAGTTCCTCATCCGCGCCGGGCTCGTCGGTGTGCTGCGGGCCGC
GTCCGGCATCGAGGTCGTCGGGGAGGCGGGCGACGGCGCGGAGGCCGTGGAGCTGGCCGCGGCGACCCGGCCCGACGTGA
TCCTCATGGACATCCGGATGCCCGGCATGAACGGCATCACGGCCACCGAGCGCATCCTGGCCGCGGCCCCCGACCCGGCG
CCGCGCGTCCTGGTCCTGACCACCTTCGACCTCGACGAGTACGTGTACGGGGCGCTGCGCGCGGGCGCGTCCGGGTTCCT
GCTCAAGGACTCGGGGCCGGAGCGGCTGCTCGCCGCGGTGGCGGCGGTCGGCAGCGGTGACGCGCTGTTCGCGCCGAGCG
TCACGCGCCGTCTTGTGGAGGCGTTCGCCTCGCGGCCCGGGAGCACCCCGCTGGTGGGCGCCGAGTCGCCGCCGGGTCTG
GAGTCCCTGACGGGCCGGGAGCTGGAGGTGCTCAGGCTGATAGCGCGCGGCCTGTCGAACGCCGACATAGCGGACCGCCT
GTACATCAGCGAGGCGACCGTCAAGACGCATCTGAACCGCACGATGAACAAGCTGGACATCGACAGCAGGGCCCAGGCCG
TGGTGATGGCCTATGAGTCGGGCCTGGTCACCCCGGGCGACCAGGACCTCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(162-217)

Response regulator receiver domain (Response_reg)

(7-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.9

95.217

0.361
  degU Bacillus subtilis subsp. subtilis str. 168

36.564

98.696

0.361

Multiple sequence alignment