Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   C9F11_RS23545 Genome accession   NZ_CP030771
Coordinates   5513958..5515367 (-) Length   469 a.a.
NCBI ID   WP_138961137.1    Uniprot ID   -
Organism   Streptomyces sp. YIM 121038     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5508958..5520367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9F11_RS23525 (C9F11_23460) - 5509796..5510482 (+) 687 WP_138961134.1 response regulator transcription factor -
  C9F11_RS23530 - 5510977..5511597 (-) 621 Protein_4604 phosphatase PAP2 family protein -
  C9F11_RS23535 (C9F11_23470) - 5511827..5512660 (+) 834 WP_138961135.1 hypothetical protein -
  C9F11_RS23540 (C9F11_23475) disA 5512743..5513867 (-) 1125 WP_138961136.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  C9F11_RS23545 (C9F11_23480) radA/sms 5513958..5515367 (-) 1410 WP_138961137.1 DNA repair protein RadA Machinery gene
  C9F11_RS23555 (C9F11_23485) - 5515644..5517353 (+) 1710 WP_249401854.1 sigma-70 family RNA polymerase sigma factor -
  C9F11_RS23560 (C9F11_23490) - 5517363..5518307 (-) 945 WP_138966901.1 hypothetical protein -
  C9F11_RS23565 (C9F11_23495) - 5518445..5519377 (+) 933 WP_138961139.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49510.68 Da        Isoelectric Point: 8.0026

>NTDB_id=260477 C9F11_RS23545 WP_138961137.1 5513958..5515367(-) (radA/sms) [Streptomyces sp. YIM 121038]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSALPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATDGHRTLYVTGEESASQVRLRADRIGALADDLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGIVGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPAGMKVTEVADMGDALRVLPRSRRREAPREEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=260477 C9F11_RS23545 WP_138961137.1 5513958..5515367(-) (radA/sms) [Streptomyces sp. YIM 121038]
ATGGCTGCCCGTACGAAAACCGCCAAGGACCGTCCGTCCTACCGCTGCACCGAATGCGGCTGGCAGACGGCCAAATGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTGCGCACCACCACGCCCGGCC
GCGTCACCACCTCCGCGCTGCCCATCGGCCAGGTCGACGGCCGCCAGGCCACCGCACGCTCCACCGGCGTCCCCGAGCTC
GACCGCGTCCTCGGCGGCGGCCTGGTGCCCGGCGCCGTGGTGCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACGCT
GCTGCTCGACGTCGCGGCGAAGGCGGCCACGGACGGCCACCGCACGCTCTATGTGACCGGCGAGGAGTCGGCCAGCCAGG
TCCGGCTGCGCGCCGACCGCATCGGCGCGCTCGCCGACGACCTGTATCTGGCGGCGGAGACCGACCTGGCCGCGGTCCTC
GGCCACTTGGACGCGGTGAAGCCGTCGCTGCTGATCCTGGACTCGGTGCAGACGGTCGCGTCCCCGGAGATCGACGGCGC
GCCCGGCGGCATGGCGCAGGTCCGCGAGGTCGCCGGGGCCCTCATCCGCGCCTCCAAGGAGCGCGGCATGTCCACGCTCC
TGGTCGGCCACGTCACCAAGGACGGCGCGATCGCGGGCCCCCGCCTCCTGGAGCACCTCGTGGACGTGGTGCTGCACTTC
GAGGGCGACCGGCACGCGCGCCTGCGCCTGGTCCGCGGCGTCAAGAACAGATACGGGGCGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCGTCGGCCTCGCCGACCCCAGCGGCCTGTTCCTCACCCGCCGCGCCGAGCCCGTGCCCG
GCACCTGTCTGACGGTGACCCTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTGCAGGCGCTCACCGTGGACTCCCAGATC
CCCTCGCCGCGCCGCACCACATCGGGCCTGGAGACGTCCCGGGTGTCGATGATGCTGGCCGTCCTGGAGCAGCGCGGCCG
CATCAGCGCCCTCGGCAAGCGCGACATCTACAGCGCGACGGTCGGCGGCGTGAAGCTGTCCGAGCCCGCCGCCGACCTCG
CCGTGGCGCTCGCGCTGGCCTCCGCCGCCAGCGACACCCCGCTGCCGAAGAACCTGGTCGCGATCGGTGAGGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACCGGGGTGCAGCGCAGACTGGCCGAGGCGCACCGCCTGGGCTTCACGCACGCGCTCGT
ACCGGCCGACCCCGGGAAGGTTCCGGCCGGTATGAAGGTCACCGAAGTCGCCGACATGGGCGACGCGCTGCGCGTCCTTC
CGAGATCGCGTCGCCGAGAGGCCCCACGGGAGGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus pneumoniae D39

42.889

95.949

0.412
  radA Streptococcus pneumoniae R6

42.889

95.949

0.412
  radA Streptococcus pneumoniae Rx1

42.889

95.949

0.412
  radA Streptococcus pneumoniae TIGR4

42.889

95.949

0.412
  radA Streptococcus mitis NCTC 12261

44.366

90.832

0.403
  radA Streptococcus mitis SK321

44.366

90.832

0.403

Multiple sequence alignment