Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   C9F11_RS22530 Genome accession   NZ_CP030771
Coordinates   5278719..5279318 (+) Length   199 a.a.
NCBI ID   WP_138960979.1    Uniprot ID   -
Organism   Streptomyces sp. YIM 121038     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5273719..5284318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9F11_RS22510 (C9F11_22450) - 5273775..5276294 (+) 2520 WP_138960976.1 dolichyl-phosphate beta-glucosyltransferase -
  C9F11_RS22515 (C9F11_22455) - 5276504..5277154 (+) 651 WP_138960977.1 hypothetical protein -
  C9F11_RS22520 (C9F11_22460) - 5277209..5278006 (-) 798 WP_249401838.1 SLATT domain-containing protein -
  C9F11_RS22525 (C9F11_22465) - 5278275..5278616 (+) 342 WP_138960978.1 YbaB/EbfC family nucleoid-associated protein -
  C9F11_RS22530 (C9F11_22470) recR 5278719..5279318 (+) 600 WP_138960979.1 recombination mediator RecR Machinery gene
  C9F11_RS22535 (C9F11_22475) - 5279311..5279991 (+) 681 WP_138960980.1 DUF5063 domain-containing protein -
  C9F11_RS22540 (C9F11_22480) - 5280066..5280383 (+) 318 WP_138960981.1 trypco2 family protein -
  C9F11_RS22545 (C9F11_22485) - 5280390..5283059 (+) 2670 WP_138960982.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21812.17 Da        Isoelectric Point: 5.0034

>NTDB_id=260472 C9F11_RS22530 WP_138960979.1 5278719..5279318(+) (recR) [Streptomyces sp. YIM 121038]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKEKVRFCATCGNVAQEELCAICRDPRRDPSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=260472 C9F11_RS22530 WP_138960979.1 5278719..5279318(+) (recR) [Streptomyces sp. YIM 121038]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAATTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCGGAGCCGACGGACGTCCGGCGTCTGGCGCATGCCCTCCTGGAGGTGAAGGAGAAGGTCC
GCTTCTGCGCGACCTGCGGGAACGTGGCGCAGGAGGAGCTCTGCGCGATCTGCCGCGACCCCCGCAGGGACCCCTCGGTC
ATCTGTGTGGTCGAGGAGCCCAAGGACGTCGTGGCGATCGAGCGGACCCGCGAGTTCCGGGGCCGGTACCACGTGCTCGG
CGGCGCCATCAGCCCCATCGAGGGCGTGGGCCCCGACGACCTGCGCATACGGGAACTCCTCGCGCGCCTCGCCGACGGCA
CGGTCACCGAGCTGATCCTGGCGACGGACCCGAACCTGGAGGGCGAGGCCACGGCGACGTACCTCGCGCGCATGATCAAG
CCGATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGACTCCCTGTCGGGGGAGATCTGGAATACGCGGACGAGGTCACCCT
GGGCCGCGCTTTCGAGGGGAGACGACTCCTAGATGTCTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462