Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C9F11_RS18960 Genome accession   NZ_CP030771
Coordinates   4535430..4536056 (+) Length   208 a.a.
NCBI ID   WP_138960417.1    Uniprot ID   -
Organism   Streptomyces sp. YIM 121038     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4530430..4541056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9F11_RS18945 (C9F11_18900) - 4531039..4532514 (-) 1476 WP_138960414.1 M1 family metallopeptidase -
  C9F11_RS18950 (C9F11_18905) - 4532633..4533190 (-) 558 WP_138960415.1 heme-binding protein -
  C9F11_RS18955 (C9F11_18910) - 4533674..4534906 (+) 1233 WP_249401789.1 sensor histidine kinase -
  C9F11_RS18960 vraR 4535430..4536056 (+) 627 WP_138960417.1 response regulator transcription factor Regulator
  C9F11_RS18965 (C9F11_18920) - 4536220..4536720 (-) 501 WP_138960418.1 hypothetical protein -
  C9F11_RS18970 (C9F11_18925) - 4538340..4539554 (+) 1215 WP_138960419.1 NAD(P)-binding protein -
  C9F11_RS18975 (C9F11_18930) - 4539621..4540628 (+) 1008 WP_138960420.1 zinc-binding dehydrogenase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 21816.22 Da        Isoelectric Point: 7.8841

>NTDB_id=260466 C9F11_RS18960 WP_138960417.1 4535430..4536056(+) (vraR) [Streptomyces sp. YIM 121038]
MPVRLLVCDDHAVVRAGLLALLGSAPGVEVVGEAGSGEEAVALAAKLRPDVVLMDLQLGPGTDGVEATRRITAAAGGGRP
HVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFSAIRAAACGRTALSPPVASRVMARMREPRPGLTPRERDILGQLA
QGLGNREIARALFISEATVKTHLGRIYDKLGVETRAGAVAVAKEQRLL

Nucleotide


Download         Length: 627 bp        

>NTDB_id=260466 C9F11_RS18960 WP_138960417.1 4535430..4536056(+) (vraR) [Streptomyces sp. YIM 121038]
TTGCCGGTCCGGCTTCTCGTCTGCGACGACCACGCCGTCGTCCGGGCGGGCCTGCTCGCCCTGCTCGGCAGCGCGCCCGG
GGTCGAGGTGGTCGGGGAGGCCGGTTCCGGCGAGGAGGCGGTGGCCCTGGCCGCGAAGCTGCGGCCGGACGTCGTCCTCA
TGGACCTCCAACTGGGCCCCGGGACGGACGGCGTGGAGGCCACGCGCCGCATCACGGCGGCGGCCGGGGGCGGGAGGCCG
CACGTCCTTGTCCTCACCACGTACGACACCGACGCCGACATCACCCGTGCGATCGAGGCGGGCGCCACCGGCTATCTGCT
CAAGGCCGAGCGGCCCGAGGAGCTGTTCTCGGCGATCCGCGCCGCCGCGTGCGGCCGCACCGCGCTCTCGCCGCCCGTCG
CGTCCCGCGTGATGGCCCGCATGCGGGAACCCCGGCCCGGCCTCACCCCGCGCGAACGCGACATCCTGGGCCAGCTGGCG
CAGGGCCTCGGCAACCGCGAGATCGCCCGTGCGCTGTTCATCAGCGAGGCCACGGTGAAGACGCACCTGGGCCGCATCTA
CGACAAGCTCGGCGTGGAGACACGGGCGGGCGCGGTGGCCGTGGCCAAGGAACAGCGGCTCCTCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-202)

Response regulator receiver domain (Response_reg)

(6-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.336

100

0.399
  degU Bacillus subtilis subsp. subtilis str. 168

35

100

0.37

Multiple sequence alignment