Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C9F11_RS09915 Genome accession   NZ_CP030771
Coordinates   2430485..2431159 (-) Length   224 a.a.
NCBI ID   WP_249401663.1    Uniprot ID   -
Organism   Streptomyces sp. YIM 121038     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2425485..2436159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9F11_RS09885 (C9F11_09810) - 2425970..2426914 (-) 945 WP_138958912.1 SPFH domain-containing protein -
  C9F11_RS09890 (C9F11_09815) - 2427062..2427490 (-) 429 WP_138958913.1 NfeD family protein -
  C9F11_RS09895 (C9F11_09820) - 2427539..2428330 (-) 792 WP_138958914.1 ABC transporter ATP-binding protein -
  C9F11_RS09900 (C9F11_09825) - 2428463..2429266 (+) 804 WP_138958915.1 hypothetical protein -
  C9F11_RS09905 (C9F11_09830) - 2429688..2429930 (-) 243 WP_138958916.1 chaplin -
  C9F11_RS09910 (C9F11_09835) - 2430043..2430288 (-) 246 WP_138958917.1 chaplin -
  C9F11_RS09915 (C9F11_09840) vraR 2430485..2431159 (-) 675 WP_249401663.1 response regulator transcription factor Regulator
  C9F11_RS09920 (C9F11_09845) - 2431152..2432297 (-) 1146 WP_138958918.1 GAF domain-containing sensor histidine kinase -
  C9F11_RS09925 (C9F11_09850) - 2432900..2433589 (+) 690 WP_138958919.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24115.56 Da        Isoelectric Point: 5.6973

>NTDB_id=260441 C9F11_RS09915 WP_249401663.1 2430485..2431159(-) (vraR) [Streptomyces sp. YIM 121038]
MAENEGAVPAPVTRRIRVLLVDDHQVVRRGLRTFLEIQDDIEVVGEASDGAEGVARAEELKPDVVLMDVKMPGMDGVEAL
RKLRELANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLSQEEANNSQGRG
GSLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGVAG

Nucleotide


Download         Length: 675 bp        

>NTDB_id=260441 C9F11_RS09915 WP_249401663.1 2430485..2431159(-) (vraR) [Streptomyces sp. YIM 121038]
GTGGCTGAGAACGAAGGGGCGGTGCCCGCCCCGGTCACACGGCGGATCCGGGTGCTCCTGGTCGACGACCACCAGGTGGT
GCGCCGCGGCCTGCGTACGTTCCTGGAGATCCAGGACGACATCGAGGTCGTCGGCGAGGCCTCGGACGGCGCCGAAGGCG
TCGCGCGCGCCGAGGAGCTGAAGCCGGACGTCGTCCTGATGGACGTCAAGATGCCCGGCATGGACGGCGTGGAAGCCCTG
CGCAAGCTGCGCGAGCTCGCCAACCCCGCGCGCGTGCTCATCGTCACCAGCTTCACCGAGCAGCGCACGGTCGTGCCCGC
CCTGCGCGCGGGCGCCGCCGGCTATGTGTACAAGGACGTGGACCCCGACGCCCTCGCCGGAGCCATCCGCTCCGTGCACG
CCGGACACGTCCTGCTCCAGCCCGAGGTGGCGGGCGCCCTGTTGTCCCAGGAGGAGGCCAACAACTCACAGGGCAGGGGC
GGCTCCCTGACCGAGCGGGAGCGCGAGGTGCTCGGCCTGATCGCGGACGGCCGTTCGAACCGCGAGATCGCCCGCGCCCT
GGTGCTCTCCGAGAAGACCGTCAAGACACACGTGTCGAACATCCTCATGAAGCTCGACCTCGCCGACCGCACCCAGGCCG
CCCTCTGGGCCGTGCGCCACGGCGTGGCGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(162-217)

Response regulator receiver domain (Response_reg)

(18-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.19

93.75

0.433
  degU Bacillus subtilis subsp. subtilis str. 168

38.739

99.107

0.384