Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C9F11_RS06565 Genome accession   NZ_CP030771
Coordinates   1683349..1684011 (+) Length   220 a.a.
NCBI ID   WP_138958357.1    Uniprot ID   -
Organism   Streptomyces sp. YIM 121038     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1678349..1689011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9F11_RS06540 (C9F11_06470) - 1678584..1679672 (+) 1089 WP_138958352.1 enoyl-CoA hydratase/isomerase family protein -
  C9F11_RS06545 (C9F11_06475) - 1679738..1680178 (-) 441 WP_138958353.1 hypothetical protein -
  C9F11_RS06550 (C9F11_06480) - 1680261..1680998 (-) 738 WP_171075653.1 ABC transporter permease -
  C9F11_RS06555 (C9F11_06485) - 1681001..1681948 (-) 948 WP_138958355.1 ATP-binding cassette domain-containing protein -
  C9F11_RS06560 (C9F11_06490) - 1682058..1683305 (+) 1248 WP_138958356.1 histidine kinase -
  C9F11_RS06565 (C9F11_06495) vraR 1683349..1684011 (+) 663 WP_138958357.1 response regulator transcription factor Regulator
  C9F11_RS06570 (C9F11_06500) - 1684126..1685283 (+) 1158 WP_138966167.1 ROK family transcriptional regulator -
  C9F11_RS06575 (C9F11_06505) - 1685370..1686131 (-) 762 WP_138958358.1 GntR family transcriptional regulator -
  C9F11_RS06580 (C9F11_06510) - 1686421..1687311 (-) 891 WP_138958359.1 RNA polymerase sigma-70 factor -
  C9F11_RS06585 (C9F11_06515) - 1687482..1688321 (+) 840 WP_138958360.1 alpha/beta fold hydrolase -
  C9F11_RS06590 (C9F11_06520) - 1688336..1688737 (-) 402 WP_138958361.1 VOC family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23473.04 Da        Isoelectric Point: 5.0149

>NTDB_id=260436 C9F11_RS06565 WP_138958357.1 1683349..1684011(+) (vraR) [Streptomyces sp. YIM 121038]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVRQLRPDVVAMDVRMPLLDGIEATRAVLRTVQDPPKI
VVITTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPAAVRRLAASHGEERGEEGARSAFARAGLTGR
EEEVLRLMARGLSNAEIAGRLVVGTETVKSHVSAVLAKLGARDRTQAVIVAYESGFVAPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=260436 C9F11_RS06565 WP_138958357.1 1683349..1684011(+) (vraR) [Streptomyces sp. YIM 121038]
ATGCCCGTGACCGTGCTCCTCGTCGACGACGAGCCCCTCGTCCGCGCGGGTCTGCGCGCCGTCCTGGAGGCGCAGCCCGA
CATCGAGGTCGTCGGGGAGGCGGCCGACGGCGCCGCCGTGATCCCTTTGGTTCGGCAGCTGCGCCCGGACGTCGTCGCGA
TGGACGTGCGCATGCCCCTCCTGGACGGCATCGAGGCCACGCGCGCGGTGCTGCGCACGGTGCAGGACCCGCCCAAGATC
GTCGTCATCACGACGTTCGAGAACGACGAGTACGTGTACGAGGCGCTGCGCGCGGGTGCCGACGGCTTCCTGCTCAAGCG
GGCGCGGCCCGCGGAGATCGTGCACGCGGTGCGGCTGGTGGCCGAGGGCGAGTCGCTGCTGTTCCCGGCCGCGGTGCGCC
GCCTGGCGGCCAGCCACGGCGAGGAGCGGGGCGAGGAGGGTGCCCGGTCCGCGTTCGCGCGGGCGGGCCTCACCGGGCGT
GAGGAGGAGGTGCTGCGCCTGATGGCGCGCGGCCTGTCGAACGCGGAGATCGCGGGGCGGCTCGTGGTCGGCACCGAGAC
GGTGAAGTCGCATGTGAGCGCGGTGCTCGCGAAGCTCGGCGCGCGGGACCGGACGCAGGCGGTGATCGTGGCGTACGAGT
CCGGTTTCGTGGCTCCGGGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(157-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.183

99.545

0.4
  degU Bacillus subtilis subsp. subtilis str. 168

37.5

100

0.382

Multiple sequence alignment