Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C9F11_RS04945 Genome accession   NZ_CP030771
Coordinates   1300823..1301494 (+) Length   223 a.a.
NCBI ID   WP_138958087.1    Uniprot ID   -
Organism   Streptomyces sp. YIM 121038     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1295823..1306494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9F11_RS04920 (C9F11_04860) - 1295889..1296887 (-) 999 WP_249402140.1 acetylserotonin O-methyltransferase -
  C9F11_RS04925 (C9F11_04865) - 1297153..1297980 (-) 828 WP_171075641.1 STAS domain-containing protein -
  C9F11_RS04930 (C9F11_04870) - 1298180..1298731 (-) 552 WP_138958084.1 GNAT family protein -
  C9F11_RS04935 (C9F11_04875) - 1298782..1299372 (+) 591 WP_171075642.1 TetR/AcrR family transcriptional regulator -
  C9F11_RS04940 (C9F11_04880) - 1299528..1300826 (+) 1299 WP_138958086.1 histidine kinase -
  C9F11_RS04945 (C9F11_04885) vraR 1300823..1301494 (+) 672 WP_138958087.1 response regulator transcription factor Regulator
  C9F11_RS04950 (C9F11_04890) - 1301561..1302037 (+) 477 WP_138958088.1 MerR family transcriptional regulator -
  C9F11_RS04955 (C9F11_04895) - 1302046..1303077 (+) 1032 WP_138958089.1 aldo/keto reductase -
  C9F11_RS04960 (C9F11_04900) - 1303068..1303913 (-) 846 WP_138958090.1 class I SAM-dependent methyltransferase -
  C9F11_RS04965 (C9F11_04905) - 1304021..1304605 (+) 585 WP_138958091.1 TetR/AcrR family transcriptional regulator -
  C9F11_RS04970 (C9F11_04910) - 1304666..1305190 (-) 525 WP_138958092.1 VOC family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23550.15 Da        Isoelectric Point: 5.3850

>NTDB_id=260433 C9F11_RS04945 WP_138958087.1 1300823..1301494(+) (vraR) [Streptomyces sp. YIM 121038]
MTIRVLIADDQAMVREALSVLLGAQPDLDVVATAEDGAAAVARATALRPDVVVMDIRMPGLDGIEATRRITADPASPTKV
LALTTFNLDEYVYEALRAGASGFLLKEASGSRLADGIRVVARGDALLSPELTKRLITEFARIGPVAKRPTGVVVDRLTAR
ETEVLVQVAQGLSNAEIATALTVAEETVKTHVGRILHKLALRDRTQAAVFAYESGLVTPGATA

Nucleotide


Download         Length: 672 bp        

>NTDB_id=260433 C9F11_RS04945 WP_138958087.1 1300823..1301494(+) (vraR) [Streptomyces sp. YIM 121038]
ATGACGATCCGCGTGCTGATCGCCGACGACCAGGCCATGGTGCGCGAGGCCCTCTCCGTCCTGCTCGGCGCCCAACCCGA
CCTCGACGTCGTCGCCACGGCCGAGGACGGCGCCGCGGCCGTGGCCCGCGCCACCGCGCTGCGGCCCGACGTCGTCGTCA
TGGACATCCGCATGCCCGGCCTCGACGGCATCGAGGCGACCCGCCGGATCACCGCGGACCCCGCGTCCCCGACGAAGGTC
CTGGCCCTGACCACCTTCAACCTCGACGAGTACGTGTACGAGGCGCTGCGCGCCGGGGCGAGCGGCTTCCTGCTCAAGGA
GGCCTCCGGCAGCCGGCTCGCCGACGGGATCAGGGTGGTGGCGCGGGGCGACGCGCTGCTCTCCCCGGAGCTCACCAAGC
GGCTCATCACCGAGTTCGCCCGCATCGGCCCGGTGGCGAAGCGGCCCACCGGCGTGGTCGTCGACCGGCTCACCGCGCGC
GAGACCGAGGTCCTCGTCCAGGTCGCCCAGGGCCTGTCCAACGCGGAGATCGCCACGGCCCTCACCGTCGCCGAGGAGAC
CGTCAAGACGCACGTCGGCCGGATCCTGCACAAGCTGGCCCTGCGCGACCGCACCCAGGCCGCCGTCTTCGCCTACGAGT
CGGGCCTCGTCACTCCGGGCGCCACCGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-115)

Bacterial regulatory proteins, luxR family (GerE)

(156-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.475

97.309

0.404
  degU Bacillus subtilis subsp. subtilis str. 168

37.719

100

0.386