Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DSB71_RS02090 Genome accession   NZ_CP030768
Coordinates   449053..449790 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2017C-4173W12     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444053..454790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB71_RS02075 clpC 444507..447080 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  DSB71_RS02080 yfiH 447210..447941 (-) 732 WP_000040163.1 purine nucleoside phosphorylase YfiH -
  DSB71_RS02085 rluD 447938..448918 (-) 981 WP_000079106.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DSB71_RS02090 comL 449053..449790 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  DSB71_RS02100 raiA 450061..450402 (+) 342 WP_000178463.1 ribosome-associated translation inhibitor RaiA -
  DSB71_RS02105 pheL 450506..450553 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  DSB71_RS02110 pheA 450652..451812 (+) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  DSB71_RS02115 tyrA 451855..452976 (-) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  DSB71_RS02120 aroF 452987..454057 (-) 1071 WP_001168043.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  DSB71_RS02125 yfiL 454266..454631 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=260352 DSB71_RS02090 WP_000197686.1 449053..449790(+) (comL) [Escherichia coli strain 2017C-4173W12]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=260352 DSB71_RS02090 WP_000197686.1 449053..449790(+) (comL) [Escherichia coli strain 2017C-4173W12]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAACCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment