Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DSB73_RS16905 Genome accession   NZ_CP030767
Coordinates   3034926..3035663 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2017C-4109     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3029926..3040663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB73_RS16890 clpC 3030380..3032953 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  DSB73_RS16895 yfiH 3033083..3033814 (-) 732 WP_000040152.1 purine nucleoside phosphorylase YfiH -
  DSB73_RS16900 rluD 3033811..3034791 (-) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DSB73_RS16905 comL 3034926..3035663 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  DSB73_RS16915 raiA 3035934..3036275 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  DSB73_RS16920 pheL 3036379..3036426 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  DSB73_RS16925 pheA 3036525..3037685 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  DSB73_RS16930 tyrA 3037728..3038849 (-) 1122 WP_120795350.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  DSB73_RS16935 aroF 3038860..3039930 (-) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  DSB73_RS16940 yfiL 3040140..3040505 (+) 366 WP_001301878.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=260299 DSB73_RS16905 WP_000197686.1 3034926..3035663(+) (comL) [Escherichia coli strain 2017C-4109]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=260299 DSB73_RS16905 WP_000197686.1 3034926..3035663(+) (comL) [Escherichia coli strain 2017C-4109]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment