Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DRF63_RS10725 Genome accession   NZ_CP030753
Coordinates   2246184..2246846 (+) Length   220 a.a.
NCBI ID   WP_005599756.1    Uniprot ID   A3N3Q8
Organism   Actinobacillus pleuropneumoniae strain S4074     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2241184..2251846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRF63_RS10690 (DRF63_10680) - 2241622..2242182 (-) 561 WP_005599745.1 TIGR00730 family Rossman fold protein -
  DRF63_RS10695 (DRF63_10685) - 2242245..2242568 (+) 324 WP_005599746.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  DRF63_RS10700 (DRF63_10690) crp 2242617..2243291 (-) 675 WP_208622122.1 cAMP-activated global transcriptional regulator CRP Regulator
  DRF63_RS10705 (DRF63_10695) - 2243369..2243587 (-) 219 WP_005599748.1 YheU family protein -
  DRF63_RS10710 (DRF63_10700) slmA 2243593..2244201 (-) 609 WP_005620316.1 nucleoid occlusion factor SlmA -
  DRF63_RS10715 (DRF63_10705) dut 2244307..2244762 (-) 456 WP_005599752.1 dUTP diphosphatase -
  DRF63_RS10720 (DRF63_10710) coaBC 2244771..2245976 (-) 1206 WP_005602882.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  DRF63_RS10725 (DRF63_10715) radC 2246184..2246846 (+) 663 WP_005599756.1 RadC family protein Machinery gene
  DRF63_RS10730 (DRF63_10720) rpmB 2247015..2247251 (+) 237 WP_005599762.1 50S ribosomal protein L28 -
  DRF63_RS10735 (DRF63_10725) rpmG 2247263..2247433 (+) 171 WP_005599764.1 50S ribosomal protein L33 -
  DRF63_RS11160 - 2247559..2247777 (+) 219 WP_162031030.1 hypothetical protein -
  DRF63_RS10740 (DRF63_10730) - 2247864..2248424 (+) 561 WP_005599767.1 hypothetical protein -
  DRF63_RS10745 (DRF63_10735) - 2248705..2250069 (+) 1365 WP_005599768.1 diaminobutyrate--2-oxoglutarate transaminase -
  DRF63_RS10750 (DRF63_10740) ddc 2250198..2251733 (+) 1536 WP_005620317.1 L-2,4-diaminobutyrate decarboxylase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25014.07 Da        Isoelectric Point: 5.7943

>NTDB_id=260264 DRF63_RS10725 WP_005599756.1 2246184..2246846(+) (radC) [Actinobacillus pleuropneumoniae strain S4074]
MDNVVLMPREKLLASGAESLTDQELLAIFLRTGIKGMPVMQLSQEVLNGFGSLRELLSADLATFCRMKGLGQTQFIQLQA
SKEMTKRYLAQQMQVRENINEPYLAVMCFQAELESEEREVFMVMFLDNQNRLIKKEKMFYGTINQATVYPREIIKEALKC
NAAAIIVAHNHPSGNCTPSESDRALTKKLEMACDLVGIRFVDHIVVGKGDYFSFEEEKFR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=260264 DRF63_RS10725 WP_005599756.1 2246184..2246846(+) (radC) [Actinobacillus pleuropneumoniae strain S4074]
ATGGATAACGTTGTATTAATGCCAAGAGAAAAATTATTGGCCTCCGGAGCGGAATCACTCACCGATCAAGAATTGTTGGC
GATTTTTCTACGTACGGGTATCAAGGGCATGCCTGTTATGCAATTATCGCAAGAAGTATTGAACGGTTTCGGTTCGTTAC
GAGAATTGTTAAGTGCTGATTTAGCGACTTTCTGCCGTATGAAAGGCTTAGGACAAACGCAATTTATTCAGTTGCAAGCC
TCAAAGGAAATGACTAAGCGTTATTTAGCACAACAAATGCAAGTGAGAGAAAATATTAATGAACCTTATTTAGCCGTAAT
GTGCTTTCAAGCCGAATTGGAATCGGAAGAACGAGAGGTATTTATGGTGATGTTTCTTGATAATCAGAATCGGTTGATTA
AAAAAGAAAAAATGTTTTACGGCACCATTAATCAAGCAACGGTTTACCCTAGAGAAATCATTAAAGAAGCATTAAAATGT
AATGCGGCGGCAATTATTGTTGCACACAATCATCCGTCGGGAAATTGTACTCCTTCCGAATCGGATAGAGCATTGACGAA
AAAACTGGAAATGGCGTGCGATTTGGTCGGTATTCGCTTTGTCGATCATATCGTTGTCGGCAAAGGCGATTATTTTTCCT
TCGAAGAAGAGAAGTTTCGCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(8-74)

RadC-like JAB domain (RadC)

(102-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N3Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

63.721

97.727

0.623