Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CSC38_RS13845 Genome accession   NZ_CP030337
Coordinates   2511869..2512606 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain AR_451     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2506869..2517606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC38_RS13830 (CSC38_2487) clpC 2507323..2509896 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  CSC38_RS13835 (CSC38_2488) yfiH 2510026..2510757 (-) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  CSC38_RS13840 (CSC38_2489) rluD 2510754..2511734 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CSC38_RS13845 (CSC38_2490) comL 2511869..2512606 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CSC38_RS13855 (CSC38_2491) raiA 2512876..2513217 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CSC38_RS13860 pheL 2513321..2513368 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CSC38_RS13865 (CSC38_2492) pheA 2513467..2514627 (+) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  CSC38_RS13870 (CSC38_2493) tyrA 2514670..2515791 (-) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CSC38_RS13875 (CSC38_2494) - 2515802..2515975 (-) 174 Protein_2445 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=260057 CSC38_RS13845 WP_000197686.1 2511869..2512606(+) (comL) [Escherichia coli strain AR_451]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=260057 CSC38_RS13845 WP_000197686.1 2511869..2512606(+) (comL) [Escherichia coli strain AR_451]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376