Detailed information NTG0260025

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: CXP47_RS26215
• Genome accession: NZ_CP025309
• Coordinates: 5875327..5876655 (+)
• Length: 442 a.a.
• NCBI ID: WP_101283614.1
• Uniprot ID: A0AAP9VTY3
• Organism: Pseudomonas chlororaphis strain Lzh-T5
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5870327..5881655

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXP47_RS26195 (CXP47_26195)	pgeF	5871826..5872551 (-)	726	WP_009050932.1	peptidoglycan editing factor PgeF	-
CXP47_RS26200 (CXP47_26200)	rluD	5872548..5873510 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
CXP47_RS26205 (CXP47_26205)	-	5873663..5874685 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
CXP47_RS26210 (CXP47_26210)	-	5874820..5875053 (+)	234	WP_007924721.1	PP0621 family protein	-
CXP47_RS26215 (CXP47_26215)	pilR	5875327..5876655 (+)	1329	WP_101283614.1	sigma-54-dependent transcriptional regulator	Regulator
CXP47_RS26220 (CXP47_26220)	thiO	5876652..5877752 (-)	1101	WP_101283616.1	glycine oxidase ThiO	-
CXP47_RS26225 (CXP47_26225)	-	5877807..5878208 (-)	402	WP_009050937.1	type IV pilin protein	-
CXP47_RS26230 (CXP47_26230)	-	5878222..5881290 (-)	3069	WP_101283618.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48857.32 Da
• Isoelectric Point: 9.3790

>NTDB_id=260025 CXP47_RS26215 WP_101283614.1 5875327..5876655(+) (pilR) [Pseudomonas chlororaphis strain Lzh-T5]
MSPQQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQRHRLRMPLA
ILSTCARQETAVRVLKAGAIDFLSKPVALARLRELLNGALPKSIPPKPVTGPLLGNSTAMHKLRGQIHKLAQSQASVYIS
GESGSGKELAARAIHDQGPRASQGFVPINCGAIPPELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLQLTPNGAHPASAPSPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=260025 CXP47_RS26215 WP_101283614.1 5875327..5876655(+) (pilR) [Pseudomonas chlororaphis strain Lzh-T5]
ATGAGCCCACAGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGTAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGGTTGGAATTACTCGAGCATATCCAGCGCCACCGGCTGCGAATGCCACTGGCC
ATCCTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCGGGTCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCTTGCGCGAGCTACTGAACGGCGCCCTGCCCAAATCGATACCACCGAAGCCTGTTACTGGCCCCTTGC
TGGGCAATTCGACCGCCATGCACAAACTGCGTGGACAGATCCACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGCCGCCCGCGCGATCCACGACCAGGGACCACGGGCCAGCCAGGGCTTCGTGCC
GATCAACTGCGGGGCTATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCG
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCACTGGCA
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGACAGCAGGAGGTCCAGGTTGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGACGCTTTCGCCAGGATCTCTACTACCGCC
TCAACGTGATCGAACTGGCGGTGCCACCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCGCAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGACC
TGCAACTGACACCAAACGGCGCACACCCGGCCAGCGCGCCCAGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Sigma-54 interaction domain (Sigma54_activat) (133-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.591	100	0.667
pilR	Acinetobacter baumannii strain A118	43.991	100	0.464